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  5. Tin_g22909

Tin_g22909


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g22909

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00111p00107400 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21065... 0.03 OrthoFinder output from all 47 species
Adi_g003764 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g022409 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g023734 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g23669 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g44730 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g15319 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g23203 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g23775 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28193 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g37344 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37595 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g02865 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g04254 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04389 LPA66 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g17427 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28679 CRR2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g35630 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g68030 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44172.t1 Aspi01Gene44172 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0221.g058730 No alias not classified & original description: CDS=1-747 0.03 OrthoFinder output from all 47 species
Azfi_s0349.g066523 EMB2758 not classified & original description: CDS=141-2294 0.04 OrthoFinder output from all 47 species
Azfi_s0758.g085492 No alias not classified & original description: CDS=1-2652 0.03 OrthoFinder output from all 47 species
Cba_g03378 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07437 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g35153 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.02G049700.1 Ceric.02G049700 not classified & original description: pacid=50584245... 0.04 OrthoFinder output from all 47 species
Ceric.12G016200.1 Ceric.12G016200 not classified & original description: pacid=50601153... 0.03 OrthoFinder output from all 47 species
Dac_g04615 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g05121 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g21976 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g26710 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g45747 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g46025 EMB2261 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g36076 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g38857 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05349 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g18439 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13294 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g17807 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g04337 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g17341 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18049 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18845 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g19011 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g43024 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g03305 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06627 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28803 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g34215 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g41389 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g24045 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g38647 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g38774 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02916 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g04775 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12220 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g43620 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g30640 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17170 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53979 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59315 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g05165 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e035817_P001 Zm00001e035817 Pentatricopeptide repeat-containing protein At4g32430,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 646 672
IPR002885 Pentatricopeptide_repeat 1125 1149
IPR002885 Pentatricopeptide_repeat 108 130
IPR002885 Pentatricopeptide_repeat 544 573
IPR002885 Pentatricopeptide_repeat 617 643
IPR002885 Pentatricopeptide_repeat 311 334
IPR002885 Pentatricopeptide_repeat 209 232
IPR002885 Pentatricopeptide_repeat 1051 1098
IPR002885 Pentatricopeptide_repeat 948 995
IPR002885 Pentatricopeptide_repeat 844 890
IPR002885 Pentatricopeptide_repeat 235 281
IPR002885 Pentatricopeptide_repeat 438 485
IPR002885 Pentatricopeptide_repeat 336 383
IPR002885 Pentatricopeptide_repeat 133 179
IPR002885 Pentatricopeptide_repeat 744 791
No external refs found!