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  5. Tin_g27169

Tin_g27169


Description : component *(PetM/VII) of cytochrome b6/f complex & original description: none


Gene families : OG0007944 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007944_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g27169
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00208110 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.cytochrome b6/f... 0.03 OrthoFinder output from all 47 species
AT2G26500 No alias cytochrome b6f complex subunit (petM), putative 0.04 OrthoFinder output from all 47 species
Aev_g07600 No alias component *(PetM/VII) of cytochrome b6/f complex &... 0.04 OrthoFinder output from all 47 species
Ala_g12927 No alias component *(PetM/VII) of cytochrome b6/f complex &... 0.08 OrthoFinder output from all 47 species
Als_g54693 No alias component *(PetM/VII) of cytochrome b6/f complex &... 0.04 OrthoFinder output from all 47 species
Aop_g09963 No alias component *(PetM/VII) of cytochrome b6/f complex &... 0.11 OrthoFinder output from all 47 species
Aspi01Gene19184.t1 Aspi01Gene19184 component *(PetM/VII) of cytochrome b6/f complex &... 0.03 OrthoFinder output from all 47 species
Azfi_s0034.g025256 No alias component *(PetM/VII) of cytochrome b6/f complex &... 0.07 OrthoFinder output from all 47 species
Ceric.32G011800.1 Ceric.32G011800 component *(PetM/VII) of cytochrome b6/f complex &... 0.07 OrthoFinder output from all 47 species
Dde_g41229 No alias component *(PetM/VII) of cytochrome b6/f complex &... 0.13 OrthoFinder output from all 47 species
Gb_00822 No alias component PetM/VII of cytochrome b6/f complex 0.04 OrthoFinder output from all 47 species
LOC_Os03g55720.2 LOC_Os03g55720 component PetM/VII of cytochrome b6/f complex 0.06 OrthoFinder output from all 47 species
Len_g11628 No alias component *(PetM/VII) of cytochrome b6/f complex &... 0.1 OrthoFinder output from all 47 species
Len_g11629 No alias component *(PetM/VII) of cytochrome b6/f complex &... 0.03 OrthoFinder output from all 47 species
Len_g29641 No alias component *(PetM/VII) of cytochrome b6/f complex &... 0.14 OrthoFinder output from all 47 species
MA_10294942g0010 No alias component PetM/VII of cytochrome b6/f complex 0.05 OrthoFinder output from all 47 species
Mp1g07170.1 No alias component PetM/VII of cytochrome b6/f complex 0.13 OrthoFinder output from all 47 species
Nbi_g20551 No alias component *(PetM/VII) of cytochrome b6/f complex &... 0.14 OrthoFinder output from all 47 species
Ore_g17180 No alias component *(PetM/VII) of cytochrome b6/f complex &... 0.03 OrthoFinder output from all 47 species
Pir_g19323 No alias component *(PetM/VII) of cytochrome b6/f complex &... 0.06 OrthoFinder output from all 47 species
Pp3c6_20300V3.1 Pp3c6_20300 cytochrome b6f complex subunit (petM), putative 0.03 OrthoFinder output from all 47 species
Ppi_g55276 No alias component *(PetM/VII) of cytochrome b6/f complex &... 0.03 OrthoFinder output from all 47 species
Smo438339 No alias Photosynthesis.photophosphorylation.cytochrome b6/f... 0.03 OrthoFinder output from all 47 species
Solyc01g109040.4.1 Solyc01g109040 component PetM/VII of cytochrome b6/f complex 0.15 OrthoFinder output from all 47 species
Zm00001e011966_P002 Zm00001e011966 component PetM/VII of cytochrome b6/f complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0009512 cytochrome b6f complex IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0004089 carbonate dehydratase activity IEP HCCA
MF GO:0004618 phosphoglycerate kinase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005261 monoatomic cation channel activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP HCCA
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR012595 PetM_cyt_b6/f_cplx_su7 158 184
No external refs found!