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  5. Tin_g27506

Tin_g27506


Description : component *(uL29) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0000495 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000495_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g27506
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00225520 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
AT2G39390 No alias Ribosomal L29 family protein 0.13 OrthoFinder output from all 47 species
AT3G09500 No alias Ribosomal L29 family protein 0.18 OrthoFinder output from all 47 species
AT3G55170 No alias Ribosomal L29 family protein 0.05 OrthoFinder output from all 47 species
AT5G02610 No alias Ribosomal L29 family protein 0.18 OrthoFinder output from all 47 species
Adi_g042798 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Adi_g042799 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Adi_g045235 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Adi_g124923 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aev_g32223 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ala_g18235 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Ala_g36147 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Als_g24513 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Als_g28114 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Aob_g07681 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Aop_g17159 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Aop_g19909 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g23213 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.17 OrthoFinder output from all 47 species
Aspi01Gene58513.t1 Aspi01Gene58513 component *(uL29) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0437.g069964 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Azfi_s0449.g070720 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Ceric.10G004300.1 Ceric.10G004300 component *(uL29) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Ceric.39G045700.1 Ceric.39G045700 component *(uL29) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000241.79 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 OrthoFinder output from all 47 species
Cre14.g617900 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.19 OrthoFinder output from all 47 species
Dac_g01910 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Dac_g04430 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Dac_g29193 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Dcu_g40454 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Dde_g13562 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
GSVIVT01005972001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 OrthoFinder output from all 47 species
GSVIVT01025050001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 OrthoFinder output from all 47 species
Gb_01009 No alias component RPL35 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Gb_33813 No alias component RPL35 of LSU proteome component 0.1 OrthoFinder output from all 47 species
LOC_Os02g30050.1 LOC_Os02g30050 component RPL35 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Len_g03553 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Len_g05873 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Lfl_g24559 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Lfl_g31826 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Lfl_g35530 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
MA_10429159g0020 No alias component RPL35 of LSU proteome component 0.05 OrthoFinder output from all 47 species
MA_37003g0010 No alias component RPL35 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Mp3g07170.1 No alias component RPL35 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Mp6g05620.1 No alias component RPL35 of LSU proteome component 0.28 OrthoFinder output from all 47 species
Msp_g02937 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Msp_g28058 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Nbi_g05063 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Nbi_g15763 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Nbi_g16217 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ore_g17685 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pir_g03536 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Pir_g24455 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pir_g27935 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pp3c13_5200V3.1 Pp3c13_5200 Ribosomal L29 family protein 0.12 OrthoFinder output from all 47 species
Pp3c3_2800V3.1 Pp3c3_2800 Ribosomal L29 family protein 0.12 OrthoFinder output from all 47 species
Ppi_g20361 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Ppi_g22603 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g22608 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0053.g014105 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g05963 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g05972 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Sam_g06023 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g23420 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Sam_g31234 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g31723 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g37983 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.17 OrthoFinder output from all 47 species
Sam_g46978 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Smo419858 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 OrthoFinder output from all 47 species
Smo438324 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 OrthoFinder output from all 47 species
Smo79331 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 OrthoFinder output from all 47 species
Solyc04g010240.3.1 Solyc04g010240 component RPL35 of LSU proteome component 0.24 OrthoFinder output from all 47 species
Solyc06g075620.3.1 Solyc06g075620 component RPL35 of LSU proteome component 0.05 OrthoFinder output from all 47 species
Spa_g05790 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Spa_g07343 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Spa_g07344 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Spa_g34294 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Zm00001e008428_P002 Zm00001e008428 component RPL35 of LSU proteome component 0.12 OrthoFinder output from all 47 species
Zm00001e014607_P001 Zm00001e014607 component RPL35 of LSU proteome component 0.16 OrthoFinder output from all 47 species
Zm00001e040695_P003 Zm00001e040695 component RPL35 of LSU proteome component 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP HCCA
CC GO:0000445 THO complex part of transcription export complex IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006553 lysine metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008235 metalloexopeptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009085 lysine biosynthetic process IEP HCCA
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046451 diaminopimelate metabolic process IEP HCCA
MF GO:0070006 metalloaminopeptidase activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001854 Ribosomal_L29/L35 38 93
No external refs found!