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  5. Tin_g28925

Tin_g28925 (PKR1, CHR4)


Aliases : PKR1, CHR4

Description : CHD3-type chromaTin remodeling factor *(PKL/PKR) & original description: none


Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g28925
Cluster HCCA: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
AT3G06010 ATCHR12 Homeotic gene regulator 0.04 OrthoFinder output from all 47 species
Aev_g09087 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g59182 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Aob_g14299 CHR11 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.03 OrthoFinder output from all 47 species
Aop_g06101 No alias chromatin remodeling factor *(ALC1) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20304 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene47130.t1 SYD, CHR3,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene66096.t1 CHR11, Aspi01Gene66096 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.03 OrthoFinder output from all 47 species
Azfi_s0129.g048917 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Cba_g02115 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Cba_g06040 CHR5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g16449 CHR17 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.03 OrthoFinder output from all 47 species
Ceric.06G006600.1 ATCHR12, Ceric.06G006600 SMARCA component *(SYD/BRM/MINU) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.19G069200.1 CHR11, Ceric.19G069200 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.04 OrthoFinder output from all 47 species
Ceric.21G025000.1 CHR11, Ceric.21G025000 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.03 OrthoFinder output from all 47 species
Ceric.21G081900.1 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000350.9 PKR2 CHD3-type chromatin-remodeling factor PICKLE... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000545.10 ATCHR12 Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre03.g179300 CHR5 RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
Dac_g22364 No alias chromatin remodeling factor *(ALC1) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g02069 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.04 OrthoFinder output from all 47 species
Dcu_g19159 CHR11 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.02 OrthoFinder output from all 47 species
Dde_g08436 CHR5 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g05070 CHR17 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.03 OrthoFinder output from all 47 species
Ehy_g18387 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
GSVIVT01035901001 PKL, GYM, CHR6,... Chromatin organisation.chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Gb_05671 PKL, GYM, CHR6,... CHD3-type chromatin-remodeling factor PICKLE... 0.03 OrthoFinder output from all 47 species
LOC_Os01g27040.1 CHR17, LOC_Os01g27040 chromatin remodeling factor (Iswi) 0.03 OrthoFinder output from all 47 species
LOC_Os07g31450.1 PKR1, CHR4,... chromatin remodeling factor (Chd3/Mi-2) 0.03 OrthoFinder output from all 47 species
Len_g29294 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Len_g57697 PKL, GYM, CHR6,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10427196g0010 PKL, GYM, CHR6,... CHD3-type chromatin-remodeling factor PICKLE... 0.03 OrthoFinder output from all 47 species
MA_10430012g0010 PKL, GYM, CHR6,... CHD3-type chromatin-remodeling factor PICKLE... 0.02 OrthoFinder output from all 47 species
MA_10437250g0010 No alias Probable helicase CHR10 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_141135g0010 PKL, GYM, CHR6,... CHD3-type chromatin-remodeling factor PICKLE... 0.03 OrthoFinder output from all 47 species
MA_8926002g0010 SYD, CHR3 Chromatin structure-remodeling complex protein SYD... 0.02 OrthoFinder output from all 47 species
Mp3g15030.1 CHR17 chromatin remodeling factor (Iswi) 0.02 OrthoFinder output from all 47 species
Mp8g17660.1 ATCHR12 chromatin remodeling factor (Snf2) 0.02 OrthoFinder output from all 47 species
Msp_g15707 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.06 OrthoFinder output from all 47 species
Ore_g10377 CHR17 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g16130 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g26259 SYD, CHR3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g16726 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Ppi_g04716 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Ppi_g13843 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g32094 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Sam_g29292 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.04 OrthoFinder output from all 47 species
Sam_g40553 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g068560.3.1 PKR1, CHR4,... chromatin remodeling factor (Chd3/Mi-2) 0.02 OrthoFinder output from all 47 species
Spa_g21765 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Spa_g46637 PKL, GYM, CHR6,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e017643_P001 CHR17, Zm00001e017643 chromatin remodeling factor (Iswi) 0.03 OrthoFinder output from all 47 species
Zm00001e026331_P001 CHR17, Zm00001e026331 chromatin remodeling factor (Iswi) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0140658 ATP-dependent chromatin remodeler activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 335 378
IPR000330 SNF2_N 845 1120
IPR000313 PWWP_dom 107 202
IPR009463 DUF1087 1438 1478
IPR001650 Helicase_C 1145 1257
IPR023780 Chromo_domain 740 789
No external refs found!