Tin_g29053

Description : component *(eL42) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0001983 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001983_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Tin_g29053
Cluster	HCCA: Cluster_51

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00040p00106300	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
AMTR_s00077p00123980	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	OrthoFinder output from all 47 species
AT3G23390	No alias	Zinc-binding ribosomal protein family protein	0.02	OrthoFinder output from all 47 species
AT4G14320	No alias	Zinc-binding ribosomal protein family protein	0.14	OrthoFinder output from all 47 species
Adi_g074466	No alias	component *(eL42) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Als_g26606	No alias	component *(eL42) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g17011	No alias	component *(eL42) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Aop_g33471	No alias	component *(eL42) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Aop_g55967	No alias	component *(eL42) of large ribosomal-subunit (LSU)...	0.01	OrthoFinder output from all 47 species
Azfi_s0111.g045692	No alias	component *(eL42) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0390.g067675	No alias	component *(eL42) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Ceric.07G068200.1	Ceric.07G068200	component *(eL42) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ceric.14G031000.1	Ceric.14G031000	component *(eL42) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ceric.29G042400.1	Ceric.29G042400	component *(eL42) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000489.11	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.12	OrthoFinder output from all 47 species
Cre06.g310700	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.13	OrthoFinder output from all 47 species
Dac_g46318	No alias	component *(eL42) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Dcu_g17062	No alias	component *(eL42) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Dcu_g51127	No alias	component *(eL42) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dde_g26679	No alias	component *(eL42) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
GSVIVT01012052001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	OrthoFinder output from all 47 species
GSVIVT01032097001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.08	OrthoFinder output from all 47 species
Gb_13148	No alias	component RPL36a of LSU proteome component	0.09	OrthoFinder output from all 47 species
Gb_34419	No alias	component RPL36a of LSU proteome component	0.1	OrthoFinder output from all 47 species
LOC_Os07g26740.1	LOC_Os07g26740	component RPL36a of LSU proteome component	0.02	OrthoFinder output from all 47 species
LOC_Os07g33898.1	LOC_Os07g33898	component RPL36a of LSU proteome component	0.04	OrthoFinder output from all 47 species
LOC_Os07g33997.1	LOC_Os07g33997	component RPL36a of LSU proteome component	0.04	OrthoFinder output from all 47 species
Lfl_g22707	No alias	component *(eL42) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g25065	No alias	component *(eL42) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
MA_99845g0010	No alias	component RPL36a of LSU proteome component	0.11	OrthoFinder output from all 47 species
Mp2g25770.1	No alias	component RPL36a of LSU proteome component	0.08	OrthoFinder output from all 47 species
Msp_g06398	No alias	component *(eL42) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Ore_g00450	No alias	component *(eL42) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Pir_g60179	No alias	component *(eL42) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Pp3c26_11220V3.1	Pp3c26_11220	Zinc-binding ribosomal protein family protein	0.05	OrthoFinder output from all 47 species
Pp3c3_10260V3.1	Pp3c3_10260	Zinc-binding ribosomal protein family protein	0.05	OrthoFinder output from all 47 species
Pp3c4_27290V3.1	Pp3c4_27290	Zinc-binding ribosomal protein family protein	0.02	OrthoFinder output from all 47 species
Pp3c7_20120V3.1	Pp3c7_20120	Zinc-binding ribosomal protein family protein	0.03	OrthoFinder output from all 47 species
Ppi_g28165	No alias	component *(eL42) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g55666	No alias	component *(eL42) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0028.g009958	No alias	component *(eL42) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Sam_g07243	No alias	component *(eL42) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g23302	No alias	component *(eL42) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Smo161986	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	OrthoFinder output from all 47 species
Solyc03g112850.3.1	Solyc03g112850	component RPL36a of LSU proteome component	0.05	OrthoFinder output from all 47 species
Spa_g55229	No alias	component *(eL42) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Zm00001e010489_P002	Zm00001e010489	component RPL36a of LSU proteome component	0.11	OrthoFinder output from all 47 species
Zm00001e033410_P001	Zm00001e033410	component RPL36a of LSU proteome component	0.07	OrthoFinder output from all 47 species
Zm00001e035123_P001	Zm00001e035123	component RPL36a of LSU proteome component	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000290	deadenylation-dependent decapping of nuclear-transcribed mRNA	IEP	HCCA
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0004055	argininosuccinate synthase activity	IEP	HCCA
BP	GO:0006401	RNA catabolic process	IEP	HCCA
BP	GO:0006402	mRNA catabolic process	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006525	arginine metabolic process	IEP	HCCA
BP	GO:0006526	arginine biosynthetic process	IEP	HCCA
MF	GO:0008047	enzyme activator activity	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0008652	amino acid biosynthetic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	HCCA
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
MF	GO:0030234	enzyme regulator activity	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
BP	GO:0043085	positive regulation of catalytic activity	IEP	HCCA
BP	GO:0044093	positive regulation of molecular function	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0050790	regulation of catalytic activity	IEP	HCCA
BP	GO:0065009	regulation of molecular function	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
MF	GO:0098772	molecular function regulator activity	IEP	HCCA
BP	GO:0110154	RNA decapping	IEP	HCCA
BP	GO:0110156	methylguanosine-cap decapping	IEP	HCCA
MF	GO:0140677	molecular function activator activity	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA
BP	GO:1901605	alpha-amino acid metabolic process	IEP	HCCA
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000552	Ribosomal_L44e	31	106

External Links

No external refs found!

Tin_g29053

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation