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  5. Tin_g29059

Tin_g29059 (LOP1, TRN1)


Aliases : LOP1, TRN1

Description : not classified & original description: none


Gene families : OG0000350 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000350_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g29059

Target Alias Description ECC score Gene Family Method Actions
Aop_g58555 LOP1, TRN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.18G016400.1 Ceric.18G016400 not classified & original description: pacid=50620952... 0.03 OrthoFinder output from all 47 species
Ceric.18G016500.1 Ceric.18G016500 not classified & original description: pacid=50621773... 0.03 OrthoFinder output from all 47 species
Dde_g46639 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g28705 LOP1, TRN1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g39240 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g23036 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g38222 LOP1, TRN1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g41660 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g37529 LOP1, TRN1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g14611 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g23881 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g57097 LOP1, TRN1 not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0015977 carbon fixation IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR032171 COR 612 748
No external refs found!