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  5. Tin_g29524

Tin_g29524


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g29524

Target Alias Description ECC score Gene Family Method Actions
AT1G50270 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g005694 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005760 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g008293 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g010668 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g033266 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g035612 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036683 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g061137 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g067906 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g079794 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g082256 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g099249 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g100823 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05685 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06767 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07226 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g13814 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09162 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0048.g030454 No alias not classified & original description: CDS=2-2074 0.03 OrthoFinder output from all 47 species
Cba_g04690 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05154 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75261 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g21408 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g35085 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08229 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08785 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g09653 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17208 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g02370 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g38127 MEF19 not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os03g55840.1 LOC_Os03g55840 Pentatricopeptide repeat-containing protein DWY1,... 0.04 OrthoFinder output from all 47 species
LOC_Os11g17530.2 LOC_Os11g17530 Pentatricopeptide repeat-containing protein At2g37320... 0.02 OrthoFinder output from all 47 species
MA_370961g0010 REME1 Pentatricopeptide repeat-containing protein At3g24000,... 0.02 OrthoFinder output from all 47 species
MA_863836g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
Msp_g03763 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g04332 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g04437 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28728 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g34152 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06328 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g24205 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g41047 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g18545 OTP82 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g32582 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g41731 OTP82 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g02854 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03106 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g19712 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57545 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63828 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17397 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29087 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31006 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g48074 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g55046 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001817 No alias not classified & original description: CDS=1-3483 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007750 No alias not classified & original description: CDS=1-1920 0.03 OrthoFinder output from all 47 species
Sam_g27517 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g46501 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo101245 CRR2 Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
Solyc12g042400.1.1 SLO1, Solyc12g042400 Pentatricopeptide repeat-containing protein At2g29760,... 0.02 OrthoFinder output from all 47 species
Spa_g14145 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e015695_P001 Zm00001e015695 Pentatricopeptide repeat-containing protein At4g16835,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0031248 protein acetyltransferase complex IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
CC GO:0043189 H4/H2A histone acetyltransferase complex IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902493 acetyltransferase complex IEP HCCA
CC GO:1902562 H4 histone acetyltransferase complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 24 48
No external refs found!