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  5. Tin_g30138

Tin_g30138


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g30138

Target Alias Description ECC score Gene Family Method Actions
AT1G77170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g087163 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g12481 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16835 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17018 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06307 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07484 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20531 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g37478 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.05G079500.1 Ceric.05G079500 not classified & original description: pacid=50579193... 0.03 OrthoFinder output from all 47 species
Ceric.10G013000.1 EMB2758, Ceric.10G013000 not classified & original description: pacid=50613337... 0.03 OrthoFinder output from all 47 species
Ceric.11G026900.1 Ceric.11G026900 not classified & original description: pacid=50595788... 0.03 OrthoFinder output from all 47 species
Ceric.12G030100.1 Ceric.12G030100 not classified & original description: pacid=50600629... 0.04 OrthoFinder output from all 47 species
Ceric.18G013900.1 Ceric.18G013900 not classified & original description: pacid=50622476... 0.03 OrthoFinder output from all 47 species
Ceric.28G037300.1 Ceric.28G037300 not classified & original description: pacid=50570602... 0.03 OrthoFinder output from all 47 species
Ceric.34G009900.1 Ceric.34G009900 not classified & original description: pacid=50623876... 0.03 OrthoFinder output from all 47 species
Dac_g12748 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g16073 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g21258 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g25289 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g39652 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08876 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04417 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46789 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os03g43420.1 OSB1, LOC_Os03g43420 ssDNA-binding protein (OSB) 0.02 OrthoFinder output from all 47 species
LOC_Os09g34870.1 LOC_Os09g34870 Pentatricopeptide repeat-containing protein At2g36980,... 0.03 OrthoFinder output from all 47 species
LOC_Os12g08140.1 LOC_Os12g08140 Pentatricopeptide repeat-containing protein At2g33760... 0.03 OrthoFinder output from all 47 species
Lfl_g07814 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g05630 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06275 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g10444 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g22679 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g12890 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05329 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05936 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g56822 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g25244 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo106861 OTP82 Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
Spa_g11331 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g04591 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g41006 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
MF GO:0042803 protein homodimerization activity IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
MF GO:0060590 ATPase regulator activity IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 976 1032
IPR002885 Pentatricopeptide_repeat 450 471
IPR002885 Pentatricopeptide_repeat 859 879
IPR002885 Pentatricopeptide_repeat 756 779
IPR002885 Pentatricopeptide_repeat 654 674
IPR002885 Pentatricopeptide_repeat 349 372
IPR002885 Pentatricopeptide_repeat 375 422
IPR002885 Pentatricopeptide_repeat 884 930
IPR002885 Pentatricopeptide_repeat 781 828
IPR002885 Pentatricopeptide_repeat 273 310
IPR002885 Pentatricopeptide_repeat 174 218
IPR002885 Pentatricopeptide_repeat 475 522
IPR002885 Pentatricopeptide_repeat 577 624
IPR002885 Pentatricopeptide_repeat 679 726
No external refs found!