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  5. Tin_g30446

Tin_g30446


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g30446

Target Alias Description ECC score Gene Family Method Actions
Adi_g036795 MEF19 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g042910 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g18203 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g05283 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17649 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g27794 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g33318 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g35872 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g03203 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03230 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03860 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g04818 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g14757 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15903 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18809 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g27895 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30821 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54869 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g61080 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27232 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g37332 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g03230 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g03536 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04243 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g08782 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09162 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09731 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16819 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g18136 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g19946 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20195 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23786 MEF19 ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g23996 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g25847 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g26042 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000662 No alias not classified & original description: CDS=1-2844 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000996 OTP84 not classified & original description: CDS=1-3012 0.03 OrthoFinder output from all 47 species
Azfi_s0011.g012490 No alias not classified & original description: CDS=1-2382 0.03 OrthoFinder output from all 47 species
Azfi_s0028.g023878 No alias not classified & original description: CDS=1-2883 0.03 OrthoFinder output from all 47 species
Azfi_s0035.g025724 No alias not classified & original description: CDS=1-3840 0.04 OrthoFinder output from all 47 species
Azfi_s0050.g030992 No alias not classified & original description: CDS=1-2877 0.03 OrthoFinder output from all 47 species
Azfi_s0054.g033714 CRR22 not classified & original description: CDS=1-1803 0.06 OrthoFinder output from all 47 species
Azfi_s0127.g048709 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2400 0.02 OrthoFinder output from all 47 species
Azfi_s0166.g054406 No alias not classified & original description: CDS=1-3468 0.03 OrthoFinder output from all 47 species
Azfi_s0175.g055975 No alias not classified & original description: CDS=1-4965 0.03 OrthoFinder output from all 47 species
Azfi_s0264.g060909 EMB2758 not classified & original description: CDS=1-2373 0.02 OrthoFinder output from all 47 species
Azfi_s0282.g063034 No alias not classified & original description: CDS=389-4795 0.04 OrthoFinder output from all 47 species
Cba_g02684 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g04064 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06299 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06585 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g11729 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34536 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G109100.1 VAC1, ECB2,... not classified & original description: pacid=50584630... 0.03 OrthoFinder output from all 47 species
Ceric.03G039400.1 Ceric.03G039400 not classified & original description: pacid=50571919... 0.02 OrthoFinder output from all 47 species
Ceric.10G043800.1 Ceric.10G043800 not classified & original description: pacid=50613534... 0.05 OrthoFinder output from all 47 species
Ceric.10G062000.1 Ceric.10G062000 ssDNA-binding protein *(OSB) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.11G009800.1 Ceric.11G009800 not classified & original description: pacid=50594985... 0.03 OrthoFinder output from all 47 species
Ceric.16G024400.1 Ceric.16G024400 not classified & original description: pacid=50589838... 0.03 OrthoFinder output from all 47 species
Ceric.22G064700.1 Ceric.22G064700 not classified & original description: pacid=50614857... 0.03 OrthoFinder output from all 47 species
Ceric.24G028500.1 Ceric.24G028500 not classified & original description: pacid=50629587... 0.03 OrthoFinder output from all 47 species
Ceric.25G070000.1 VAC1, ECB2,... not classified & original description: pacid=50593626... 0.03 OrthoFinder output from all 47 species
Ceric.26G020400.1 Ceric.26G020400 not classified & original description: pacid=50600093... 0.03 OrthoFinder output from all 47 species
Ceric.29G017900.1 Ceric.29G017900 not classified & original description: pacid=50624370... 0.03 OrthoFinder output from all 47 species
Ceric.29G060200.1 Ceric.29G060200 not classified & original description: pacid=50624987... 0.02 OrthoFinder output from all 47 species
Ceric.34G063100.1 Ceric.34G063100 not classified & original description: pacid=50623551... 0.02 OrthoFinder output from all 47 species
Ceric.36G048700.1 Ceric.36G048700 not classified & original description: pacid=50569051... 0.03 OrthoFinder output from all 47 species
Ceric.38G052600.1 Ceric.38G052600 not classified & original description: pacid=50580600... 0.03 OrthoFinder output from all 47 species
Dac_g07560 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g24639 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g29399 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g43217 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g05661 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07831 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08759 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g13254 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g16811 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g21328 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g38580 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g38682 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12101 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g19361 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g25037 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g29669 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os01g08120.1 OTP81, LOC_Os01g08120 RNA editing factor (OTP81) 0.02 OrthoFinder output from all 47 species
LOC_Os05g12130.1 EMB2261, LOC_Os05g12130 RNA editing factor (ECD1) 0.02 OrthoFinder output from all 47 species
LOC_Os05g49920.1 VAC1, ECB2,... RNA editing factor (ECB2/VAC1) 0.02 OrthoFinder output from all 47 species
LOC_Os08g38610.1 LOC_Os08g38610 Pentatricopeptide repeat-containing protein At1g26900,... 0.03 OrthoFinder output from all 47 species
LOC_Os10g34720.1 LOI1, MEF11,... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Len_g04815 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17579 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g33493 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g34928 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04187 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07132 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g33318 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_23144g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
MA_3462g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
MA_42343g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
Msp_g05393 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g23950 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g26512 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g27304 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g34519 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06160 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g07619 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g08794 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g17317 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g20489 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g25474 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g30055 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g32070 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g40748 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02292 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02309 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03074 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g06896 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g07049 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g07329 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g13457 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13599 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g14457 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g15973 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g19423 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g47300 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g48319 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63661 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g15319 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06822 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07521 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g14886 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g14992 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g29087 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g33120 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g35833 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g45354 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53952 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g56225 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59302 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g61794 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g000865 No alias not classified & original description: CDS=3429-6017 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0189.g025174 No alias not classified & original description: CDS=1-1665 0.03 OrthoFinder output from all 47 species
Sam_g06265 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g07814 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g25056 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27231 No alias cofactor of plastid-encoded RNA polymerase *(TAC9) &... 0.03 OrthoFinder output from all 47 species
Sam_g35674 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g097670.4.1 EMB2261, Solyc01g097670 RNA editing factor (ECD1) 0.02 OrthoFinder output from all 47 species
Solyc03g111210.4.1 Solyc03g111210 RNA editing factor (OTP80) 0.02 OrthoFinder output from all 47 species
Solyc07g065730.1.1 Solyc07g065730 Pentatricopeptide repeat-containing protein At5g66520... 0.02 OrthoFinder output from all 47 species
Solyc11g008940.1.1 CRR2, Solyc11g008940 Pentatricopeptide repeat-containing protein At3g46790,... 0.02 OrthoFinder output from all 47 species
Spa_g02212 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g02636 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g05652 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g08133 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g09924 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g14555 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g18079 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g18188 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g26166 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g28935 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g53135 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g08446 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g31905 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e028330_P001 PTAC9, OSB2,... ssDNA-binding protein (OSB). TAC9 cofactor of... 0.03 OrthoFinder output from all 47 species
Zm00001e031351_P001 EMB2261, Zm00001e031351 RNA editing factor (ECD1) 0.02 OrthoFinder output from all 47 species
Zm00001e041694_P001 Zm00001e041694 Pentatricopeptide repeat-containing protein At5g16860... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 765 787
IPR002885 Pentatricopeptide_repeat 867 889
IPR002885 Pentatricopeptide_repeat 561 583
IPR002885 Pentatricopeptide_repeat 896 920
IPR002885 Pentatricopeptide_repeat 51 73
IPR002885 Pentatricopeptide_repeat 255 278
IPR002885 Pentatricopeptide_repeat 281 327
IPR002885 Pentatricopeptide_repeat 484 532
IPR002885 Pentatricopeptide_repeat 587 633
IPR002885 Pentatricopeptide_repeat 76 123
IPR002885 Pentatricopeptide_repeat 179 225
IPR002885 Pentatricopeptide_repeat 689 735
IPR002885 Pentatricopeptide_repeat 791 838
IPR002885 Pentatricopeptide_repeat 382 429
No external refs found!