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  5. Tin_g30714

Tin_g30714


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g30714

Target Alias Description ECC score Gene Family Method Actions
AT1G56690 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G08210 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g004489 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g015809 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g053631 MEF19 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g066461 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g069271 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g112689 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g16414 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g18055 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g63751 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g06731 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27895 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene29888.t1 Aspi01Gene29888 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07727 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.19G000700.1 VAC1, ECB2,... not classified & original description: pacid=50576122... 0.06 OrthoFinder output from all 47 species
Dac_g04194 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g44824 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g45607 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g17034 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01015461001 ABCG40, PDR12,... Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
Gb_27891 OTP86 RNA editing factor (OTP86) 0.02 OrthoFinder output from all 47 species
Lfl_g05012 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05734 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06715 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07433 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g11837 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g28067 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g22406 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30620 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03779 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07606 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29479 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g39236 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g42323 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53979 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g58118 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g59338 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004186 No alias not classified & original description: CDS=1-2421 0.04 OrthoFinder output from all 47 species
Sam_g24543 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo79052 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 47 species
Solyc02g065410.3.1 CRR22, Solyc02g065410 Pentatricopeptide repeat-containing protein At1g20230... 0.03 OrthoFinder output from all 47 species
Spa_g14314 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g15015 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g04113 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17464 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e008200_P001 Zm00001e008200 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 238 285
IPR002885 Pentatricopeptide_repeat 541 571
IPR002885 Pentatricopeptide_repeat 415 437
IPR002885 Pentatricopeptide_repeat 342 372
IPR002885 Pentatricopeptide_repeat 746 769
IPR002885 Pentatricopeptide_repeat 513 538
IPR002885 Pentatricopeptide_repeat 643 673
IPR002885 Pentatricopeptide_repeat 314 337
IPR002885 Pentatricopeptide_repeat 443 472
IPR002885 Pentatricopeptide_repeat 715 739
No external refs found!