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  5. Tin_g30716

Tin_g30716


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g30716

Target Alias Description ECC score Gene Family Method Actions
AT2G41080 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G20010 PTAC9, OSB2 plastid transcriptionally active 9 0.03 OrthoFinder output from all 47 species
Adi_g101336 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17019 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g25535 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0002.g001613 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: CDS=195-1385 0.02 OrthoFinder output from all 47 species
Azfi_s0143.g051490 No alias not classified & original description: CDS=1-2688 0.02 OrthoFinder output from all 47 species
Cba_g34432 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G019000.1 Ceric.02G019000 not classified & original description: pacid=50585115... 0.05 OrthoFinder output from all 47 species
Ceric.15G008800.1 Ceric.15G008800 not classified & original description: pacid=50639552... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000851.30 No alias Pentatricopeptide repeat-containing protein At5g61990,... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001130.28 No alias No description available 0.01 OrthoFinder output from all 47 species
GSVIVT01016874001 OTP82 Pentatricopeptide repeat-containing protein At1g08070,... 0.05 OrthoFinder output from all 47 species
GSVIVT01024588001 OTP82 Pentatricopeptide repeat-containing protein At1g08070,... 0.05 OrthoFinder output from all 47 species
GSVIVT01033863001 No alias RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
LOC_Os01g66160.1 REME1, LOC_Os01g66160 Pentatricopeptide repeat-containing protein At2g03880,... 0.04 OrthoFinder output from all 47 species
Len_g17726 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g41382 SLO1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g39284 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c6_28980V3.1 Pp3c6_28980 organellar single-stranded DNA binding protein 3 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g003970 No alias not classified & original description: CDS=1-3009 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011714 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2064 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0223.g026268 No alias not classified & original description: CDS=1-2328 0.02 OrthoFinder output from all 47 species
Sam_g11676 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo136134 EMB2261 Pentatricopeptide repeat-containing protein At3g12770... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0055085 transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 512 542
IPR002885 Pentatricopeptide_repeat 282 307
IPR002885 Pentatricopeptide_repeat 786 810
IPR002885 Pentatricopeptide_repeat 686 710
IPR002885 Pentatricopeptide_repeat 613 643
IPR002885 Pentatricopeptide_repeat 752 771
IPR002885 Pentatricopeptide_repeat 411 440
IPR002885 Pentatricopeptide_repeat 383 407
IPR002885 Pentatricopeptide_repeat 484 511
IPR002885 Pentatricopeptide_repeat 584 607
IPR002885 Pentatricopeptide_repeat 106 153
IPR002885 Pentatricopeptide_repeat 206 253
No external refs found!