Tin_g30902 (PUB13, ATPUB13)

Aliases : PUB13, ATPUB13

Description : E3 ubiquiTin ligase & original description: none

Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Tin_g30902

Target	Alias	Description	ECC score	Gene Family Method
AT1G29340	ATPUB17, PUB17	plant U-box 17	0.02	OrthoFinder output from all 47 species
AT1G71020	No alias	ARM repeat superfamily protein	0.06	OrthoFinder output from all 47 species
AT4G21350	PUB8, B80	plant U-box 8	0.02	OrthoFinder output from all 47 species
Aev_g05257	PUB8, B80	E3 ubiquitin ligase *(PUB8) & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0579.g078276	PUB13, ATPUB13	E3 ubiquitin ligase & original description: CDS=173-2116	0.06	OrthoFinder output from all 47 species
Cba_g02580	PUB8, B80	E3 ubiquitin ligase *(PUB8) & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.08G025000.1	Ceric.08G025000	not classified & original description: pacid=50638405...	0.04	OrthoFinder output from all 47 species
Ceric.13G074400.1	ATPUB17, PUB17,...	E3 ubiquitin ligase & original description:...	0.02	OrthoFinder output from all 47 species
Ceric.13G093000.1	ATPUB17, PUB17,...	not classified & original description: pacid=50635700...	0.05	OrthoFinder output from all 47 species
Ceric.26G012900.1	Ceric.26G012900	not classified & original description: pacid=50598948...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020943.20	No alias	No description available	0.01	OrthoFinder output from all 47 species
Dac_g03673	PUB14, ATPUB14	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g02771	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01020229001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
LOC_Os08g04470.1	PUB8, B80, LOC_Os08g04470	U-box domain-containing protein 8 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Len_g08149	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Len_g16436	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g01237	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g11362	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005097	No alias	not classified & original description: CDS=1-2154	0.02	OrthoFinder output from all 47 species
Smo113592	No alias	U-box domain-containing protein 2 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Spa_g05552	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g18762	ATPUB17, PUB17	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e002954_P001	PUB13, ATPUB13,...	E3 ubiquitin ligase (PUB)	0.07	OrthoFinder output from all 47 species
Zm00001e018578_P001	Zm00001e018578	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	HCCA
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0051213	dioxygenase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000225	Armadillo	466	504
IPR000225	Armadillo	383	422
IPR003613	Ubox_domain	255	324
IPR045766	MCAfunc	30	134

External Links

No external refs found!

Tin_g30902 (PUB13, ATPUB13)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation