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  5. Tin_g35678

Tin_g35678


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g35678
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00166520 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
AT5G16860 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G52630 MEF1 mitochondrial RNAediting factor 1 0.01 OrthoFinder output from all 47 species
Adi_g004274 LPA66 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g022088 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g054256 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g057717 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g067305 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g067920 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g097263 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g04109 EMB2758 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g11518 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g23493 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g32458 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g03125 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06767 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07213 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g13814 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18971 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19303 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g54924 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07960 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g16798 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27260 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09162 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g22510 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23959 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g33593 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g38565 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene12658.t1 Aspi01Gene12658 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene31801.t1 Aspi01Gene31801 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene43974.t1 REME1, Aspi01Gene43974 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene51655.t1 Aspi01Gene51655 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene65602.t1 Aspi01Gene65602 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0002.g001369 VAC1, ECB2, ATECB2 ssDNA-binding protein *(OSB) & original description: CDS=172-2610 0.02 OrthoFinder output from all 47 species
Azfi_s0035.g025565 No alias not classified & original description: CDS=1-3945 0.03 OrthoFinder output from all 47 species
Azfi_s0057.g034255 No alias not classified & original description: CDS=1-2025 0.03 OrthoFinder output from all 47 species
Azfi_s0221.g058730 No alias not classified & original description: CDS=1-747 0.01 OrthoFinder output from all 47 species
Azfi_s0349.g066523 EMB2758 not classified & original description: CDS=141-2294 0.01 OrthoFinder output from all 47 species
Cba_g06299 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g29502 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g35192 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G002600.1 EMB2758, Ceric.02G002600 not classified & original description: pacid=50585462... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000851.30 No alias Pentatricopeptide repeat-containing protein At5g61990,... 0.02 OrthoFinder output from all 47 species
Dac_g35456 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g32153 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g33116 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g38699 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g42492 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g47861 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g49213 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g12385 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g24377 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g25114 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g17712 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g20812 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008721001 No alias Pentatricopeptide repeat-containing protein At5g40410,... 0.01 OrthoFinder output from all 47 species
LOC_Os05g45850.1 LOC_Os05g45850 Pentatricopeptide repeat-containing protein At4g33170... 0.02 OrthoFinder output from all 47 species
Len_g12392 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18889 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g42306 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g44422 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06697 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07069 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07396 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g13946 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g14936 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g19289 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g19657 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g25543 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g25656 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g33055 DOT4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g36302 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g36336 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g40602 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g03763 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g04300 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g04357 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g18814 VAC1, ECB2, ATECB2 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g29683 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g47208 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g25182 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g05130 OTP82 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g42021 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g02269 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g05957 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g10801 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12550 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13338 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g34957 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05896 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g07606 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g12011 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g13105 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g13834 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g22251 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g30421 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g32582 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g55046 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g55202 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56908 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g06558 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g11848 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g24755 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27930 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g30162 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g40196 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo17005 PDE247, CLB19 Pentatricopeptide repeat-containing protein At2g17210... 0.01 OrthoFinder output from all 47 species
Solyc03g096610.2.1 Solyc03g096610 Pentatricopeptide repeat-containing protein At1g33350... 0.02 OrthoFinder output from all 47 species
Solyc07g006990.3.1 Solyc07g006990 Putative pentatricopeptide repeat-containing protein... 0.01 OrthoFinder output from all 47 species
Spa_g05402 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g09360 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g28935 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g30407 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g33712 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g50449 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g35681 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g38826 REME1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e007042_P001 Zm00001e007042 RNA editing factor (AEF1) 0.02 OrthoFinder output from all 47 species
Zm00001e032581_P001 Zm00001e032581 RNA editing factor (BLX) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005956 protein kinase CK2 complex IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
MF GO:0019207 kinase regulator activity IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0019887 protein kinase regulator activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
CC GO:0070531 BRCA1-A complex IEP HCCA
CC GO:0070552 BRISC complex IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902554 serine/threonine protein kinase complex IEP HCCA
CC GO:1902911 protein kinase complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 300 325
IPR002885 Pentatricopeptide_repeat 96 120
IPR002885 Pentatricopeptide_repeat 427 474
IPR002885 Pentatricopeptide_repeat 326 372
IPR002885 Pentatricopeptide_repeat 531 577
IPR002885 Pentatricopeptide_repeat 223 270
IPR002885 Pentatricopeptide_repeat 122 168
No external refs found!