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  5. Tin_g38740

Tin_g38740 (PUM7, APUM7)


Aliases : PUM7, APUM7

Description : not classified & original description: none


Gene families : OG0000858 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000858_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g38740

Target Alias Description ECC score Gene Family Method Actions
Ala_g20864 PUM7, APUM7 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g15341 APUM12, PUM12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.19G074400.1 APUM12, PUM12,... not classified & original description: pacid=50576469... 0.03 OrthoFinder output from all 47 species
Dcu_g06465 APUM12, PUM12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01009386001 APUM12, PUM12 Pumilio homolog 12 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01033396001 APUM12, PUM12 Pumilio homolog 12 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os11g37090.1 APUM12, PUM12,... Pumilio homolog 12 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Ppi_g17261 APUM12, PUM12 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP HCCA
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0004620 phospholipase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016298 lipase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
MF GO:0042803 protein homodimerization activity IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
MF GO:0050290 sphingomyelin phosphodiesterase D activity IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
MF GO:0060590 ATPase regulator activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 854 888
IPR001313 Pumilio_RNA-bd_rpt 892 926
IPR001313 Pumilio_RNA-bd_rpt 711 737
IPR001313 Pumilio_RNA-bd_rpt 671 701
IPR001313 Pumilio_RNA-bd_rpt 782 815
IPR001313 Pumilio_RNA-bd_rpt 747 779
IPR001313 Pumilio_RNA-bd_rpt 821 837
IPR001313 Pumilio_RNA-bd_rpt 635 668
No external refs found!