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  5. Tin_g39824

Tin_g39824 (ATPUB17, PUB17)


Aliases : ATPUB17, PUB17

Description : not classified & original description: none


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g39824

Target Alias Description ECC score Gene Family Method Actions
AT3G01400 No alias ARM repeat superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G21350 PUB8, B80 plant U-box 8 0.02 OrthoFinder output from all 47 species
Adi_g026489 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g080188 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g102535 ATPUB17, PUB17 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07222 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g05472 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g10750 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007619 PUB13, ATPUB13 not classified & original description: CDS=1-951 0.02 OrthoFinder output from all 47 species
Cba_g03737 PUB14, ATPUB14 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g07191 PUB18, ATPUB18 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g02771 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g06975 ATPUB17, PUB17 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g13215 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g17103 PUB13, ATPUB13 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g22153 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g29208 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.01 OrthoFinder output from all 47 species
LOC_Os02g49950.1 LOC_Os02g49950 E3 ubiquitin ligase (PUB) 0.07 OrthoFinder output from all 47 species
Msp_g37725 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.01 OrthoFinder output from all 47 species
Pnu_g30472 PUB13, ATPUB13 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0050.g013821 No alias not classified & original description: CDS=1-987 0.01 OrthoFinder output from all 47 species
Solyc06g076040.3.1 PUB13, ATPUB13,... E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Spa_g11467 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g11468 PUB14, ATPUB14 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g48656 PUB14, ATPUB14 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003613 Ubox_domain 333 402
IPR000225 Armadillo 465 502
No external refs found!