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  5. Tin_g43003

Tin_g43003


Description : LIM-type transcription factor & original description: none


Gene families : OG0001474 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001474_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g43003
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
Als_g22072 No alias LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g44813 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g43336 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g19676 WLIM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20012 WLIM1 LIM-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Dac_g10224 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g25168 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g25919 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g26042 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dac_g27903 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dac_g42052 No alias LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g23314 No alias LIM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g29353 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g33087 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g28505 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g18614 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g16397 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g32114 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g42918 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g39293 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
InterPro domains Description Start Stop
IPR001781 Znf_LIM 10 62
No external refs found!