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  5. Tin_g46327

Tin_g46327


Description : not classified & original description: none


Gene families : OG0002687 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002687_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g46327

Target Alias Description ECC score Gene Family Method Actions
Adi_g042718 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g01119 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03541 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g17337 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g04581 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g11223 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_35329 No alias Cold shock protein 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Lfl_g00896 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g05243 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g01808 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02273 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g26316 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27254 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g05865 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g51868 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 176 192
IPR001878 Znf_CCHC 248 262
IPR001878 Znf_CCHC 133 149
IPR001878 Znf_CCHC 214 229
IPR001878 Znf_CCHC 195 210
IPR001878 Znf_CCHC 268 283
IPR001878 Znf_CCHC 95 111
No external refs found!