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  5. Tin_g46427

Tin_g46427 (ATPGP4, PGP4, ABCB4, MDR4)


Aliases : ATPGP4, PGP4, ABCB4, MDR4

Description : not classified & original description: none


Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g46427
Cluster HCCA: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00108620 PGP11,... Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
AMTR_s00048p00046670 PGP2,... Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
AT1G27940 PGP13 P-glycoprotein 13 0.02 OrthoFinder output from all 47 species
Ala_g17861 ABCB19,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g18028 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18811 PGP11 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Als_g28385 PGP1, ABCB1, ATPGP1 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g08062 PGP11 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g38133 No alias subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene08455.t1 PGP11, Aspi01Gene08455 subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene28299.t1 Aspi01Gene28299 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0039.g026389 PGP11 subfamily ABCB transporter & original description: CDS=323-4378 0.03 OrthoFinder output from all 47 species
Ceric.02G084300.1 ABCB19,... subfamily ABCB transporter & original description:... 0.02 OrthoFinder output from all 47 species
Gb_36497 No alias subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
LOC_Os01g18670.1 PGP21, LOC_Os01g18670 subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
LOC_Os01g34970.1 PGP11, LOC_Os01g34970 subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Lfl_g10739 ABCB19,... subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g25374 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g33330 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g41280 PGP11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp3g11830.1 ABCB19,... auxin efflux transporter (ABCB19). subfamily ABCB transporter 0.01 OrthoFinder output from all 47 species
Nbi_g41769 No alias subfamily ABCB transporter & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g30543 PGP18 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57324 ATPGP4, PGP4, ABCB4, MDR4 subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g25857 PGP2 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g51926 ATPGP4, PGP4, ABCB4, MDR4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0142.g022862 No alias not classified & original description: CDS=281-511 0.03 OrthoFinder output from all 47 species
Sam_g03287 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g34538 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g48720 No alias subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g38761 PGP11 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08424 PGP11 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g11244 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g41335 PGP3, MDR3 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g41430 PGP11 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e023274_P001 PGP2, Zm00001e023274 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0006952 defense response IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 1 134
No external refs found!