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  5. Msp_g00540

Msp_g00540


Description : RING-H2-class ATL-subclass E3 ubiquitin ligase & original description: none


Gene families : OG0000008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g00540
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00056710 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AMTR_s00008p00185200 ATL6,... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AMTR_s00021p00161170 ATL2, TL2,... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AMTR_s00030p00032810 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AMTR_s00044p00221710 RHA2A,... Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
AMTR_s00129p00065710 ATL2, TL2,... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AT1G35330 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT2G01150 RHA2B RING-H2 finger protein 2B 0.03 OrthoFinder output from all 47 species
AT2G18670 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G35000 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G42350 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from all 47 species
AT2G42360 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G43430 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G11360 RHA1B RING-H2 finger A1B 0.03 OrthoFinder output from all 47 species
AT4G11370 RHA1A RING-H2 finger A1A 0.02 OrthoFinder output from all 47 species
AT4G33565 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G17600 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G27420 ATL31, CNI1 carbon/nitrogen insensitive 1 0.02 OrthoFinder output from all 47 species
AT5G53110 No alias RING/U-box superfamily protein 0.06 OrthoFinder output from all 47 species
Adi_g028522 ATL3 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Adi_g088636 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Adi_g107086 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Adi_g118032 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aev_g09630 BRH1 E3 ubiquitin ligase *(BRH) & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g13880 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aev_g39979 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aev_g40193 BRH1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g09797 ATL5 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ala_g13299 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Als_g07858 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aop_g30116 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene22449.t1 Aspi01Gene22449 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene37667.t1 ATL2, TL2,... RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene46825.t1 ATL2, TL2,... RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene56880.t1 Aspi01Gene56880 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene61901.t1 Aspi01Gene61901 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0016.g014251 ATL2, TL2 not classified & original description: CDS=1-1224 0.03 OrthoFinder output from all 47 species
Azfi_s0054.g033681 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Cba_g26664 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ceric.01G113600.1 ATL5, Ceric.01G113600 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ceric.07G057400.1 Ceric.07G057400 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Ceric.07G057700.1 Ceric.07G057700 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ceric.09G083100.1 Ceric.09G083100 not classified & original description: pacid=50587896... 0.03 OrthoFinder output from all 47 species
Ceric.09G083300.1 Ceric.09G083300 not classified & original description: pacid=50586861... 0.03 OrthoFinder output from all 47 species
Ceric.09G083800.1 Ceric.09G083800 not classified & original description: pacid=50587862... 0.03 OrthoFinder output from all 47 species
Ceric.18G058800.1 Ceric.18G058800 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ceric.21G001100.1 ATL2, TL2,... RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ceric.22G061200.1 Ceric.22G061200 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Ceric.22G061400.1 ATL2, TL2,... RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ceric.22G061700.1 Ceric.22G061700 not classified & original description: pacid=50614963... 0.04 OrthoFinder output from all 47 species
Ceric.22G062000.1 Ceric.22G062000 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ceric.29G079200.1 Ceric.29G079200 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ceric.33G012100.1 Ceric.33G012100 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ceric.36G022900.1 Ceric.36G022900 not classified & original description: pacid=50568300... 0.04 OrthoFinder output from all 47 species
Ceric.39G005300.1 ATL2, TL2,... RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Dac_g05542 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Dac_g06243 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Dac_g32939 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Dac_g39871 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Dcu_g00990 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Dcu_g15413 MEE16 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g23227 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Dcu_g23802 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Dde_g06659 ATL5 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Dde_g08169 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Dde_g37746 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g05247 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g10433 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ehy_g28199 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ehy_g30250 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01012018001 XERICO Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
GSVIVT01012019001 XERICO Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
GSVIVT01015682001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
GSVIVT01018343001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
GSVIVT01020665001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
GSVIVT01037142001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
Gb_04643 No alias RING-H2 finger protein ATL60 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_04644 ATL2, TL2 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Gb_04645 No alias RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Gb_15297 No alias RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os01g16120.1 RHA2A, LOC_Os01g16120 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os02g15060.1 LOC_Os02g15060 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os02g36300.1 ATL31, CNI1,... RING-H2-class E3 ligase 0.05 OrthoFinder output from all 47 species
LOC_Os02g45780.1 LOC_Os02g45780 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os02g52210.1 ATL31, CNI1,... RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os03g05560.1 LOC_Os03g05560 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os05g36310.1 LOC_Os05g36310 RING-H2 finger protein ATL77 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os06g34880.1 ATL43, LOC_Os06g34880 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os08g37760.1 ATL6, LOC_Os08g37760 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
LOC_Os08g44950.1 LOC_Os08g44950 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os12g24490.1 LOC_Os12g24490 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os12g42530.1 RHA3B, LOC_Os12g42530 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g12736 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10426834g0010 No alias RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
MA_10434759g0010 BRH1 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_105610g0010 RHA3A no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_391590g0010 BRH1 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_61738g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_68992g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_7553g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_80729g0030 ATL2, TL2 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Msp_g18716 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g36544 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g38764 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Nbi_g04641 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g24015 RHA3A RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Nbi_g25585 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ore_g10421 ATL6 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ore_g26608 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ore_g28091 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ore_g43484 ATL6 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Pir_g36925 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g01608 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Pnu_g03091 BRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g19950 ATL6 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ppi_g04891 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ppi_g12248 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g35708 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g46048 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000797 ATL8 not classified & original description: CDS=1-573 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0044.g013072 ATL8 not classified & original description: CDS=1-573 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0116.g021081 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Sam_g01312 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g28688 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Sam_g31319 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo438800 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
Solyc01g095810.3.1 Solyc01g095810 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Solyc03g083460.3.1 Solyc03g083460 RING-H2 finger protein ATL22 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc03g114090.1.1 Solyc03g114090 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Solyc10g008080.3.1 Solyc10g008080 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Solyc10g081790.1.1 Solyc10g081790 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Solyc12g055710.1.1 ATL3, Solyc12g055710 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Solyc12g087860.3.1 ATL6, Solyc12g087860 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Spa_g02204 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Spa_g17343 ATL6 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Spa_g39301 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Spa_g41285 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Zm00001e000398_P001 Zm00001e000398 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e003264_P001 Zm00001e003264 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e008020_P001 Zm00001e008020 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e014302_P001 Zm00001e014302 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Zm00001e016470_P001 Zm00001e016470 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e034421_P001 ATL6, Zm00001e034421 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e035560_P001 ATL3, Zm00001e035560 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e039314_P001 Zm00001e039314 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 89 132
No external refs found!