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  5. Msp_g01206

Msp_g01206 (ATPUB17, PUB17)


Aliases : ATPUB17, PUB17

Description : E3 ubiquitin ligase & original description: none


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g01206
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00030110 PUB15,... U-box domain-containing protein 15 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00006p00267930 evm_27.TU.AmTr_v1... U-box domain-containing protein 19 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00007p00217990 evm_27.TU.AmTr_v1... U-box domain-containing protein 16 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AMTR_s00072p00171260 PUB14, ATPUB14,... Protein degradation.peptide tagging.Ubiquitin... 0.05 OrthoFinder output from all 47 species
AMTR_s00086p00031680 evm_27.TU.AmTr_v1... U-box domain-containing protein 4 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT1G29340 ATPUB17, PUB17 plant U-box 17 0.07 OrthoFinder output from all 47 species
Adi_g017517 ATPUB17, PUB17 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g019046 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g026489 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g054040 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g080188 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g082530 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g102535 ATPUB17, PUB17 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g04770 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g05159 PUB12, AtPUB12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g09883 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g06664 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g07408 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g08869 PUB15 not classified & original description: none 0.09 OrthoFinder output from all 47 species
Als_g03799 ATPUB17, PUB17 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g07222 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.07 OrthoFinder output from all 47 species
Als_g16049 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.07 OrthoFinder output from all 47 species
Als_g16594 PUB14, ATPUB14 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g01685 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g01960 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g17483 PUB15 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Aob_g19238 ATPUB17, PUB17 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g00484 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g10750 No alias E3 ubiquitin ligase & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g19192 ATPUB17, PUB17 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g19819 ATPUB17, PUB17 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g21703 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene43158.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene44181.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.08 OrthoFinder output from all 47 species
Aspi01Gene44182.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene44183.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44184.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene44185.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene65975.t1 PUB8, B80,... E3 ubiquitin ligase *(PUB8) & original description: none 0.07 OrthoFinder output from all 47 species
Azfi_s0102.g044585 ATPUB17, PUB17 not classified & original description: CDS=188-889 0.03 OrthoFinder output from all 47 species
Azfi_s0110.g045492 ATPUB17, PUB17 not classified & original description: CDS=1-2295 0.02 OrthoFinder output from all 47 species
Azfi_s2565.g112179 No alias not classified & original description: CDS=1-438 0.04 OrthoFinder output from all 47 species
Ceric.08G025000.1 Ceric.08G025000 not classified & original description: pacid=50638405... 0.04 OrthoFinder output from all 47 species
Ceric.10G010300.1 ATPUB17, PUB17,... not classified & original description: pacid=50611933... 0.07 OrthoFinder output from all 47 species
Ceric.13G074400.1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.13G093000.1 ATPUB17, PUB17,... not classified & original description: pacid=50635700... 0.03 OrthoFinder output from all 47 species
Dac_g02154 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g08066 ATPUB17, PUB17 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g12068 No alias E3 ubiquitin ligase & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g13651 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g35977 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g39000 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g44834 ATPUB17, PUB17 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g26575 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g02331 No alias E3 ubiquitin ligase & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g02285 ATPUB17, PUB17 E3 ubiquitin ligase *(PUB8) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g02654 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g02800 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g06164 ATPUB17, PUB17 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g09056 PUB12, AtPUB12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g11164 PUB12, AtPUB12 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g17103 PUB13, ATPUB13 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g22153 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g29208 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01007275001 PUB9, ATPUB9 Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
GSVIVT01009347001 No alias U-box domain-containing protein 4 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01016225001 PUB14, ATPUB14 U-box domain-containing protein 14 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01020229001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
GSVIVT01021265001 ATPUB17, PUB17 U-box domain-containing protein 17 OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
GSVIVT01030205001 No alias U-box domain-containing protein 16 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01036669001 No alias U-box domain-containing protein 4 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_08792 ATPUB17, PUB17 U-box domain-containing protein 1 OS=Medicago truncatula... 0.03 OrthoFinder output from all 47 species
Gb_10627 PUB8, B80 U-box domain-containing protein 13 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Gb_10871 ATPUB17, PUB17 E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Gb_24091 PUB9, ATPUB9 U-box domain-containing protein 14 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Gb_29276 ATPUB17, PUB17 E3 ubiquitin ligase (PUB) 0.05 OrthoFinder output from all 47 species
LOC_Os01g72600.1 LOC_Os01g72600 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os05g39930.1 LOC_Os05g39930 U-box domain-containing protein 16 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
LOC_Os06g01304.1 PUB14, ATPUB14,... E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Len_g08149 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.05 OrthoFinder output from all 47 species
Len_g08985 ATPUB17, PUB17 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g20959 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g30685 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10426688g0010 ATPUB17, PUB17 U-box domain-containing protein 1 OS=Medicago truncatula... 0.04 OrthoFinder output from all 47 species
MA_5342g0010 PUB15 U-box domain-containing protein 12 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Msp_g37725 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g02242 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g14682 ATPUB45, PUB45 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g05165 ATPUB17, PUB17 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g20708 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g22628 PUB13, ATPUB13 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g28240 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g00381 ATPUB17, PUB17 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12553 No alias E3 ubiquitin ligase & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g38766 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g17953 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g30472 PUB13, ATPUB13 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c10_4480V3.1 ATPUB17, PUB17,... plant U-box 13 0.01 OrthoFinder output from all 47 species
Ppi_g01237 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g06418 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000382 No alias not classified & original description: CDS=1-1704 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003607 ATPUB17, PUB17 not classified & original description: CDS=1-2595 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017096 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: CDS=1-1548 0.04 OrthoFinder output from all 47 species
Sam_g03488 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g48712 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo61948 PUB13, ATPUB13 U-box domain-containing protein 13 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Smo73073 PUB39 U-box domain-containing protein 8 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc02g072080.1.1 ATPUB17, PUB17,... U-box domain-containing protein 17 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc03g114160.1.1 Solyc03g114160 E3 ubiquitin ligase (PUB) 0.06 OrthoFinder output from all 47 species
Solyc06g076040.3.1 PUB13, ATPUB13,... E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Solyc09g056450.4.1 PUB9, ATPUB9,... U-box domain-containing protein 9 OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
Solyc11g008390.2.1 PUB14, ATPUB14,... E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Solyc12g088360.2.1 Solyc12g088360 U-box domain-containing protein 4 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Spa_g05552 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.09 OrthoFinder output from all 47 species
Spa_g07392 PUB15 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g08558 ATPUB17, PUB17 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g25117 PUB14, ATPUB14 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g01104 No alias E3 ubiquiTin ligase & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g02458 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e014566_P002 PUB9, ATPUB9,... E3 ubiquitin ligase (PUB) 0.04 OrthoFinder output from all 47 species
Zm00001e018578_P001 Zm00001e018578 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e019429_P001 Zm00001e019429 U-box domain-containing protein 16 OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
Zm00001e028839_P001 Zm00001e028839 U-box domain-containing protein 16 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e031915_P001 Zm00001e031915 U-box domain-containing protein 16 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Zm00001e034012_P001 Zm00001e034012 E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Zm00001e036734_P001 PUB14, ATPUB14,... E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000225 Armadillo 417 455
IPR003613 Ubox_domain 284 354
No external refs found!