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  5. Msp_g01686

Msp_g01686 (PGP6)


Aliases : PGP6

Description : subfamily ABCB transporter & original description: none


Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g01686

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00164980 ATPGP4, PGP4,... Solute transport.primary active transport.ABC... 0.04 OrthoFinder output from all 47 species
AT2G39480 PGP6 P-glycoprotein 6 0.02 OrthoFinder output from all 47 species
Adi_g112184 ABCB19,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene20592.t1 PGP6, Aspi01Gene20592 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene46501.t2 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Cre17.g725200 PGP11 ABC transporter B family member 12 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Ehy_g12010 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01016617001 PGP20 Solute transport.primary active transport.ABC... 0.04 OrthoFinder output from all 47 species
Gb_18150 PGP13 auxin efflux transporter (ABCB19). subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
LOC_Os01g74470.1 PGP20, LOC_Os01g74470 subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Len_g04845 PGP20 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Mp2g21430.1 No alias subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Pnu_g08145 PGP11 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006153 PGP11 subfamily ABCB transporter & original description: CDS=261-4235 0.04 OrthoFinder output from all 47 species
Sam_g03721 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25355 No alias subfamily ABCB transporter & original description: none 0.05 OrthoFinder output from all 47 species
Smo419451 No alias Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
Solyc04g010310.4.1 PGP20, Solyc04g010310 subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Zm00001e001258_P003 PGP20, Zm00001e001258 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Zm00001e018488_P001 PGP20, Zm00001e018488 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 425 567
IPR011527 ABC1_TM_dom 843 1111
IPR011527 ABC1_TM_dom 80 352
IPR003439 ABC_transporter-like_ATP-bd 1181 1329
No external refs found!