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  5. Msp_g03994

Msp_g03994 (EMB2758)


Aliases : EMB2758

Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g03994
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
Adi_g004372 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005800 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g018748 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g054256 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g066672 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g069066 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g076358 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g085223 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g113395 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g13967 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g36211 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g39532 OTP84 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g05699 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18055 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30308 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07366 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g23363 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28195 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28645 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g36310 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16176 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16770 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g18871 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g26368 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007938 No alias not classified & original description: CDS=1-4179 0.03 OrthoFinder output from all 47 species
Azfi_s0048.g030525 No alias not classified & original description: CDS=1-2520 0.06 OrthoFinder output from all 47 species
Azfi_s0127.g048709 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2400 0.04 OrthoFinder output from all 47 species
Azfi_s0139.g051178 No alias not classified & original description: CDS=1-2667 0.03 OrthoFinder output from all 47 species
Azfi_s0619.g079560 EMB2758 not classified & original description: CDS=1-2046 0.04 OrthoFinder output from all 47 species
Cba_g05760 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07667 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g11914 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19051 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g19309 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19902 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20710 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34761 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g35188 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67909 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g76101 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.06G034400.1 Ceric.06G034400 not classified & original description: pacid=50619664... 0.03 OrthoFinder output from all 47 species
Ceric.12G025700.1 Ceric.12G025700 not classified & original description: pacid=50601618... 0.03 OrthoFinder output from all 47 species
Dac_g04509 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g30289 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g38493 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g42887 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g21154 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g43241 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g47860 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g07956 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g21837 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01000719001 OSB1 Cell cycle.organelle machineries.DNA... 0.02 OrthoFinder output from all 47 species
GSVIVT01033190001 OTP82 Pentatricopeptide repeat-containing protein At5g66520... 0.02 OrthoFinder output from all 47 species
Gb_17916 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
LOC_Os03g08680.1 LOC_Os03g08680 Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
LOC_Os03g43420.1 OSB1, LOC_Os03g43420 ssDNA-binding protein (OSB) 0.03 OrthoFinder output from all 47 species
Len_g33724 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_8893194g0010 MEF1 RNA editing factor (MEF1) 0.03 OrthoFinder output from all 47 species
Msp_g17145 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g04955 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g16047 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g17180 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g01673 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03285 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57366 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g05054 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g06887 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07541 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g10239 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g14452 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18869 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g52997 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g54649 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56302 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g61309 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g48865 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo138948 No alias Pentatricopeptide repeat-containing protein At3g26782,... 0.03 OrthoFinder output from all 47 species
Solyc07g005170.3.1 Solyc07g005170 Pentatricopeptide repeat-containing protein At1g09410,... 0.03 OrthoFinder output from all 47 species
Spa_g15227 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g35061 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g35104 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e005246_P001 Zm00001e005246 Pentatricopeptide repeat-containing protein At2g41080... 0.03 OrthoFinder output from all 47 species
Zm00001e007042_P001 Zm00001e007042 RNA editing factor (AEF1) 0.03 OrthoFinder output from all 47 species
Zm00001e011467_P004 emb1899, EMB175,... Pentatricopeptide repeat-containing protein At5g03800... 0.04 OrthoFinder output from all 47 species
Zm00001e029186_P001 Zm00001e029186 Pentatricopeptide repeat-containing protein At1g19720... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP HCCA
MF GO:0003747 translation release factor activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006415 translational termination IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 275 323
IPR002885 Pentatricopeptide_repeat 479 526
IPR002885 Pentatricopeptide_repeat 580 627
IPR002885 Pentatricopeptide_repeat 376 424
IPR002885 Pentatricopeptide_repeat 173 220
IPR002885 Pentatricopeptide_repeat 250 274
IPR002885 Pentatricopeptide_repeat 554 576
IPR002885 Pentatricopeptide_repeat 351 373
IPR002885 Pentatricopeptide_repeat 656 678
No external refs found!