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  5. Msp_g04300

Msp_g04300


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g04300

Target Alias Description ECC score Gene Family Method Actions
Ala_g10387 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g24034 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g28677 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene31801.t1 Aspi01Gene31801 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.19G003900.1 Ceric.19G003900 not classified & original description: pacid=50575192... 0.02 OrthoFinder output from all 47 species
LOC_Os04g02850.1 OTP84, LOC_Os04g02850 RNA editing factor (OTP84) 0.03 OrthoFinder output from all 47 species
LOC_Os07g02280.1 LOC_Os07g02280 RNA editing factor (OTP80) 0.03 OrthoFinder output from all 47 species
LOC_Os08g05750.1 LOC_Os08g05750 Pentatricopeptide repeat-containing protein At4g16835,... 0.03 OrthoFinder output from all 47 species
MA_43727g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Smo171135 OTP84 Pentatricopeptide repeat-containing protein At3g03580... 0.04 OrthoFinder output from all 47 species
Smo98551 No alias Pentatricopeptide repeat-containing protein At4g14820... 0.06 OrthoFinder output from all 47 species
Tin_g05488 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g18426 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g23239 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g24933 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g35678 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g41605 OTP81 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g46045 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 1 46
IPR002885 Pentatricopeptide_repeat 102 149
No external refs found!