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  5. Msp_g04640

Msp_g04640


Description : pectin methylesterase & original description: none


Gene families : OG0000083 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g04640
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00085870 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
AMTR_s00007p00264370 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
AMTR_s00027p00247950 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
AMTR_s00106p00092510 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
AT1G05310 No alias Pectin lyase-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G07430 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G19730 No alias Pectin lyase-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g046688 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g127146 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g10289 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g40489 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g26631 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g31556 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g06584 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g10592 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g11491 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20106 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g20602 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g30459 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene63093.t1 Aspi01Gene63093 pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0016.g014409 No alias pectin methylesterase & original description: CDS=201-1415 0.03 OrthoFinder output from all 47 species
Azfi_s0033.g024992 No alias pectin methylesterase & original description: CDS=226-1431 0.03 OrthoFinder output from all 47 species
Cba_g03729 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g11546 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G008900.1 Ceric.03G008900 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.11G006300.1 Ceric.11G006300 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.11G007100.1 Ceric.11G007100 pectin methylesterase & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.11G007600.1 Ceric.11G007600 pectin methylesterase & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.11G007800.1 Ceric.11G007800 not classified & original description: pacid=50595757... 0.02 OrthoFinder output from all 47 species
Ceric.11G007900.1 Ceric.11G007900 pectin methylesterase & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.13G037000.1 Ceric.13G037000 pectin methylesterase & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.13G037400.1 Ceric.13G037400 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.13G037800.1 Ceric.13G037800 pectin methylesterase & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.1Z171200.1 Ceric.1Z171200 pectin methylesterase & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.1Z228300.1 Ceric.1Z228300 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.21G056100.1 VGDH1, Ceric.21G056100 not classified & original description: pacid=50603924... 0.03 OrthoFinder output from all 47 species
Ceric.35G046900.1 Ceric.35G046900 pectin methylesterase & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.37G019200.1 Ceric.37G019200 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g07534 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g11068 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g11820 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Dcu_g11351 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g28954 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g13696 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g46321 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g02245 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g18839 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g19236 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01031250001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
LOC_Os01g19440.1 LOC_Os01g19440 pectin methylesterase 0.02 OrthoFinder output from all 47 species
LOC_Os05g44600.1 LOC_Os05g44600 pectin methylesterase 0.02 OrthoFinder output from all 47 species
Len_g02282 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Len_g07516 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Len_g07605 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
MA_10267810g0010 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
MA_10428207g0020 No alias Probable pectinesterase 53 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_14449g0010 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
MA_18312g0010 ATPE11, PE11 pectin methylesterase 0.02 OrthoFinder output from all 47 species
MA_304854g0010 ATPE11, PE11 pectin methylesterase 0.02 OrthoFinder output from all 47 species
MA_66089g0010 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
MA_87592g0010 ATPE11, PE11 pectin methylesterase 0.02 OrthoFinder output from all 47 species
Mp2g01420.1 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
Mp2g19430.1 No alias pectin methylesterase 0.01 OrthoFinder output from all 47 species
Mp3g01170.1 No alias pectin methylesterase 0.05 OrthoFinder output from all 47 species
Mp5g03920.1 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
Mp5g03930.1 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
Msp_g06289 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g44845 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g00669 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13021 No alias pectin methylesterase & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g14686 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g05557 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g06428 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g26065 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g27386 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g29702 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30829 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g32792 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g14779 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18465 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g25901 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g29894 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g31507 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59766 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g61465 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g63851 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005949 No alias pectin methylesterase & original description: CDS=175-1425 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010091 No alias pectin methylesterase & original description: CDS=1-882 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0104.g020122 No alias not classified & original description: CDS=269-877 0.02 OrthoFinder output from all 47 species
Sam_g02095 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g11685 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g07165 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g10100 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g11007 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g37234 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g38344 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g40449 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g40908 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g49578 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g54582 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g07049 No alias pecTin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e007306_P001 Zm00001e007306 pectin methylesterase 0.02 OrthoFinder output from all 47 species
Zm00001e027944_P002 ATPE11, PE11,... pectin methylesterase 0.02 OrthoFinder output from all 47 species
Zm00001e029074_P001 Zm00001e029074 pectin methylesterase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 70 355
No external refs found!