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  5. Msp_g05231

Msp_g05231 (ATHDA5, HDA05, HDA5)


Aliases : ATHDA5, HDA05, HDA5

Description : class-II histone deacetylase & original description: none


Gene families : OG0001559 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001559_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g05231

Target Alias Description ECC score Gene Family Method Actions
LOC_Os07g06980.1 ATHDA15, HDA15,... class-II histone deacetylase 0.02 OrthoFinder output from all 47 species
Pnu_g09864 ATHDA15, HDA15 class-II histone deacetylase & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009048 ATHDA15, HDA15 class-II histone deacetylase & original description: CDS=178-1890 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR023801 His_deacetylse_dom 25 325
No external refs found!