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  5. Msp_g05803

Msp_g05803 (VAC1, ECB2, ATECB2)


Aliases : VAC1, ECB2, ATECB2

Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g05803
Cluster HCCA: Cluster_139

Target Alias Description ECC score Gene Family Method Actions
Adi_g003796 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005657 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g008833 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g011924 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g015470 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g018129 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g025728 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036520 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g046591 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058262 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g067841 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g082256 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g097074 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g099342 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g09730 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g15170 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g09700 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g17191 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g35746 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06911 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26698 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g29210 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32255 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33246 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g56508 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g16798 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g02020 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05682 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g16505 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g16657 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g23679 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g25552 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28532 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g43404 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene41281.t1 OTP84, Aspi01Gene41281 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0001.g000621 No alias ssDNA-binding protein *(OSB) & original description: CDS=97-654 0.03 OrthoFinder output from all 47 species
Azfi_s0134.g049391 No alias not classified & original description: CDS=1-2007 0.03 OrthoFinder output from all 47 species
Azfi_s0154.g053510 No alias not classified & original description: CDS=1-2550 0.04 OrthoFinder output from all 47 species
Azfi_s0544.g076391 No alias not classified & original description: CDS=1-906 0.03 OrthoFinder output from all 47 species
Azfi_s1396.g102567 No alias not classified & original description: CDS=1-1371 0.03 OrthoFinder output from all 47 species
Cba_g02644 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06571 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g19893 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g32940 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g74873 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G121800.1 Ceric.01G121800 not classified & original description: pacid=50593016... 0.03 OrthoFinder output from all 47 species
Dac_g05682 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g07790 MEF22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g10962 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g35762 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g43165 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g14626 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g36025 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g36545 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g43258 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g45110 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g49796 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g15911 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g17215 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g21844 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g22637 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g26461 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26569 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01000244001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
GSVIVT01021246001 DOT4 Pentatricopeptide repeat-containing protein DOT4,... 0.04 OrthoFinder output from all 47 species
GSVIVT01033389001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
GSVIVT01036142001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.03 OrthoFinder output from all 47 species
Len_g03785 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g03866 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Len_g04345 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g13937 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g17928 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g19007 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g22969 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g23208 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g49951 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g35930 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
MA_187514g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
MA_6527g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Mp5g04990.1 PTAC9, OSB2 ssDNA-binding protein (OSB). TAC9 cofactor of... 0.02 OrthoFinder output from all 47 species
Msp_g03801 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g04332 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g04475 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g17336 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g23085 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g28474 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g28692 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g28761 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28763 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g31780 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g47723 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g48578 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g05483 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g30346 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g18321 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57080 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57972 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g03470 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g19866 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30091 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05336 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06375 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g07587 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g09510 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g35865 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g49226 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53727 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g61252 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g61597 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g62867 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g63223 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g05175 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12346 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g22788 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g25325 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g29293 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g38969 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g43221 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g49237 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g065840.3.1 OSB1, Solyc09g065840 ssDNA-binding protein (OSB) 0.02 OrthoFinder output from all 47 species
Spa_g15227 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g15737 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g22729 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g23707 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g23978 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g26065 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g27591 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g55658 MEF19 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g56798 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g57230 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g03388 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g05882 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g08446 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g11463 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g20089 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g20412 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g26742 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g30396 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g30968 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g31666 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g44074 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e015440_P001 CRR22, Zm00001e015440 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 386 409
IPR002885 Pentatricopeptide_repeat 622 643
IPR002885 Pentatricopeptide_repeat 284 309
IPR002885 Pentatricopeptide_repeat 414 444
IPR002885 Pentatricopeptide_repeat 446 494
IPR002885 Pentatricopeptide_repeat 209 255
IPR002885 Pentatricopeptide_repeat 547 593
IPR002885 Pentatricopeptide_repeat 310 358
IPR002885 Pentatricopeptide_repeat 108 154
No external refs found!