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  5. Msp_g06349

Msp_g06349


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g06349
Cluster HCCA: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00032470 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.03 OrthoFinder output from all 47 species
AMTR_s00046p00214930 CRR22,... Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
AT1G47580 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G66520 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g004506 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g015735 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g015809 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g035023 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g040826 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g066461 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g067033 CRR21 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g078577 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g081057 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g096701 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g099351 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g100991 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g103876 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g30904 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g07462 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g36487 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19051 DOT4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g24103 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26414 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g29683 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g37552 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g16691 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0001.g000446 No alias not classified & original description: CDS=1-2970 0.03 OrthoFinder output from all 47 species
Azfi_s0008.g011259 No alias not classified & original description: CDS=1-2301 0.04 OrthoFinder output from all 47 species
Azfi_s0048.g030528 No alias not classified & original description: CDS=1-3795 0.07 OrthoFinder output from all 47 species
Azfi_s0191.g056992 No alias not classified & original description: CDS=1-2262 0.05 OrthoFinder output from all 47 species
Azfi_s0210.g058082 No alias not classified & original description: CDS=1-2637 0.04 OrthoFinder output from all 47 species
Cba_g02717 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07366 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g38847 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.02G033100.1 Ceric.02G033100 not classified & original description: pacid=50586102... 0.03 OrthoFinder output from all 47 species
Ceric.04G078900.1 Ceric.04G078900 not classified & original description: pacid=50631863... 0.04 OrthoFinder output from all 47 species
Ceric.07G053200.1 Ceric.07G053200 not classified & original description: pacid=50626825... 0.06 OrthoFinder output from all 47 species
Ceric.07G078100.1 OTP84, Ceric.07G078100 not classified & original description: pacid=50626860... 0.04 OrthoFinder output from all 47 species
Ceric.12G028500.1 CRR22, Ceric.12G028500 not classified & original description: pacid=50602410... 0.03 OrthoFinder output from all 47 species
Ceric.13G001600.1 Ceric.13G001600 not classified & original description: pacid=50636694... 0.04 OrthoFinder output from all 47 species
Ceric.13G076400.1 Ceric.13G076400 not classified & original description: pacid=50635248... 0.03 OrthoFinder output from all 47 species
Ceric.18G001000.1 Ceric.18G001000 not classified & original description: pacid=50621627... 0.04 OrthoFinder output from all 47 species
Ceric.1Z003200.1 Ceric.1Z003200 not classified & original description: pacid=50628145... 0.06 OrthoFinder output from all 47 species
Ceric.1Z148300.1 Ceric.1Z148300 not classified & original description: pacid=50637132... 0.04 OrthoFinder output from all 47 species
Ceric.21G042400.1 Ceric.21G042400 not classified & original description: pacid=50602832... 0.03 OrthoFinder output from all 47 species
Ceric.22G079200.1 OTP84, Ceric.22G079200 not classified & original description: pacid=50615391... 0.03 OrthoFinder output from all 47 species
Ceric.24G026700.1 Ceric.24G026700 not classified & original description: pacid=50628649... 0.03 OrthoFinder output from all 47 species
Ceric.28G015100.1 Ceric.28G015100 not classified & original description: pacid=50570923... 0.04 OrthoFinder output from all 47 species
Ceric.30G025700.1 CRR22, Ceric.30G025700 not classified & original description: pacid=50609433... 0.04 OrthoFinder output from all 47 species
Ceric.34G039200.1 Ceric.34G039200 not classified & original description: pacid=50623691... 0.04 OrthoFinder output from all 47 species
Ceric.38G015500.1 Ceric.38G015500 not classified & original description: pacid=50579581... 0.03 OrthoFinder output from all 47 species
Ceric.38G024200.1 Ceric.38G024200 not classified & original description: pacid=50580039... 0.05 OrthoFinder output from all 47 species
Dac_g31947 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g04286 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g05349 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g09099 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g22008 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g22352 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g50252 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g50257 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os01g11470.1 LOC_Os01g11470 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Len_g04367 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g05402 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g23812 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g30755 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g33779 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06231 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12347 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g32916 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g33937 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g37426 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g03995 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g14279 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g34215 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g11260 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g13682 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g16605 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g20344 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g21521 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g28656 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g06978 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g16384 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03881 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g05183 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06450 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g07419 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07606 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g13926 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g36018 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g43104 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53018 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53388 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g53705 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g53969 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g59234 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001739 No alias not classified & original description: CDS=1-1443 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010154 No alias not classified & original description: CDS=1-2595 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014492 No alias not classified & original description: CDS=1-2247 0.06 OrthoFinder output from all 47 species
Sam_g06304 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g10477 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13516 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g13972 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g15556 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g27765 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g30124 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g30280 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g34625 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g35987 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g36161 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37213 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g47343 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g48011 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50908 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo16626 No alias Pentatricopeptide repeat-containing protein At4g16835,... 0.03 OrthoFinder output from all 47 species
Spa_g20468 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g23956 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g47078 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g50395 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g05931 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g17154 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g19923 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g22900 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g26455 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g43995 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e030605_P001 Zm00001e030605 Pentatricopeptide repeat-containing protein At1g31430... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006810 transport IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 348 395
IPR002885 Pentatricopeptide_repeat 450 496
IPR002885 Pentatricopeptide_repeat 147 194
IPR002885 Pentatricopeptide_repeat 48 78
IPR002885 Pentatricopeptide_repeat 423 444
IPR002885 Pentatricopeptide_repeat 250 280
IPR002885 Pentatricopeptide_repeat 323 345
IPR002885 Pentatricopeptide_repeat 119 144
IPR002885 Pentatricopeptide_repeat 20 40
No external refs found!