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  5. Msp_g06868

Msp_g06868


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g06868

Target Alias Description ECC score Gene Family Method Actions
Adi_g014368 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g26965 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g28662 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g08134 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.04G072400.1 Ceric.04G072400 not classified & original description: pacid=50630959... 0.04 OrthoFinder output from all 47 species
Ceric.05G087100.1 Ceric.05G087100 not classified & original description: pacid=50579181... 0.04 OrthoFinder output from all 47 species
Ceric.09G062300.1 Ceric.09G062300 not classified & original description: pacid=50587557... 0.03 OrthoFinder output from all 47 species
Ceric.18G077100.1 Ceric.18G077100 not classified & original description: pacid=50621411... 0.04 OrthoFinder output from all 47 species
Ceric.23G013400.1 Ceric.23G013400 not classified & original description: pacid=50609831... 0.04 OrthoFinder output from all 47 species
Ceric.32G014100.1 Ceric.32G014100 not classified & original description: pacid=50597391... 0.04 OrthoFinder output from all 47 species
Ceric.36G051900.1 Ceric.36G051900 not classified & original description: pacid=50568048... 0.04 OrthoFinder output from all 47 species
Dde_g15894 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16502 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21685 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g20660 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g38951 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g23429 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c6_28980V3.1 Pp3c6_28980 organellar single-stranded DNA binding protein 3 0.01 OrthoFinder output from all 47 species
Ppi_g01222 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g50108 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 22 69
IPR032867 DYW_dom 239 329
IPR002885 Pentatricopeptide_repeat 89 121
No external refs found!