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  5. Msp_g06900

Msp_g06900


Description : component *(eL19) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0001435 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001435_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g06900

Target Alias Description ECC score Gene Family Method Actions
AT1G02780 emb2386 Ribosomal protein L19e family protein 0.03 OrthoFinder output from all 47 species
Als_g56677 No alias component *(eL19) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Aop_g03394 No alias component *(eL19) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Cba_g48229 emb2386 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.17G056200.1 Ceric.17G056200 component *(eL19) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021181.1 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Cre02.g075700 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Ehy_g08169 No alias component *(eL19) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
GSVIVT01028052001 emb2386 Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
LOC_Os03g38260.1 LOC_Os03g38260 component RPL19 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Len_g04088 No alias component *(eL19) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
MA_102433g0010 emb2386 component RPL19 of LSU proteome component 0.02 OrthoFinder output from all 47 species
MA_1839g0010 emb2386 component RPL19 of LSU proteome component 0.03 OrthoFinder output from all 47 species
MA_22977g0010 emb2386 component RPL19 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Mp7g09050.1 No alias component RPL19 of LSU proteome component 0.05 OrthoFinder output from all 47 species
Pir_g59999 No alias component *(eL19) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pp3c15_5130V3.1 Pp3c15_5130 Ribosomal protein L19e family protein 0.01 OrthoFinder output from all 47 species
Pp3c16_410V3.1 Pp3c16_410 Ribosomal protein L19e family protein 0.02 OrthoFinder output from all 47 species
Pp3c21_11230V3.1 Pp3c21_11230 Ribosomal protein L19e family protein 0.02 OrthoFinder output from all 47 species
Pp3c22_9980V3.1 Pp3c22_9980 Ribosomal protein L19e family protein 0.01 OrthoFinder output from all 47 species
Ppi_g28399 No alias component *(eL19) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g38378 No alias component *(eL19) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Smo179747 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Spa_g02569 No alias component *(eL19) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Spa_g11536 No alias component *(eL19) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Tin_g03158 No alias component *(eL19) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e013683_P001 emb2386, Zm00001e013683 component RPL19 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Zm00001e025202_P001 Zm00001e025202 component RPL19 of LSU proteome component 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
BP GO:0031179 peptide modification IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000196 Ribosomal_L19/L19e 4 145
No external refs found!