Msp_g07741 (GATA6)

Aliases : GATA6

Description : transcription factor *(A/B-GATA) & original description: none

Gene families : OG0000100 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000100_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Msp_g07741

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00064p00107710	GATA22, CGA1,...	RNA biosynthesis.transcriptional activation.C2C2...	0.04	OrthoFinder output from all 47 species
AT3G24050	GATA1	GATA transcription factor 1	0.03	OrthoFinder output from all 47 species
AT4G36240	GATA7	GATA transcription factor 7	0.02	OrthoFinder output from all 47 species
Adi_g024585	GATA22, CGA1, GNL	transcription factor *(A/B-GATA) & original description: none	0.05	OrthoFinder output from all 47 species
Adi_g066480	GATA23	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g14443	GNC, GATA21	transcription factor *(A/B-GATA) & original description: none	0.05	OrthoFinder output from all 47 species
Azfi_s0155.g053586	GNC, GATA21	transcription factor *(A/B-GATA) & original description:...	0.05	OrthoFinder output from all 47 species
Ceric.07G000700.1	GATA12, Ceric.07G000700	transcription factor *(A/B-GATA) & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.17G054000.1	GATA5, Ceric.17G054000	transcription factor *(A/B-GATA) & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.18G043900.1	GATA15, Ceric.18G043900	transcription factor *(A/B-GATA) & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.35G025300.1	GATA20, Ceric.35G025300	transcription factor *(A/B-GATA) & original description:...	0.03	OrthoFinder output from all 47 species
Dac_g07483	GNC, GATA21	transcription factor *(A/B-GATA) & original description: none	0.05	OrthoFinder output from all 47 species
Dcu_g20096	GNC, GATA21	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g38078	GATA9	transcription factor *(A/B-GATA) & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g26819	GATA9	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g28792	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01015204001	GNC, GATA21	RNA biosynthesis.transcriptional activation.C2C2...	0.06	OrthoFinder output from all 47 species
GSVIVT01024194001	GATA5	RNA biosynthesis.transcriptional activation.C2C2...	0.03	OrthoFinder output from all 47 species
LOC_Os01g24070.1	GATA23, LOC_Os01g24070	transcription factor (GATA)	0.04	OrthoFinder output from all 47 species
LOC_Os12g42970.1	GATA4, LOC_Os12g42970	transcription factor (GATA)	0.02	OrthoFinder output from all 47 species
Len_g13378	GATA15	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g27263	GATA17	transcription factor *(A/B-GATA) & original description: none	0.05	OrthoFinder output from all 47 species
Mp7g03490.1	GATA23	transcription factor (GATA)	0.03	OrthoFinder output from all 47 species
Nbi_g02879	GATA15	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g10197	GATA5	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g03972	GATA22, CGA1, GNL	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g06827	GATA22, CGA1, GNL	transcription factor *(A/B-GATA) & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g06828	GATA22, CGA1, GNL	transcription factor *(A/B-GATA) & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g06282	GATA5	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g17136	GATA22, CGA1, GNL	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003575	GATA15	transcription factor *(A/B-GATA) & original description:...	0.03	OrthoFinder output from all 47 species
Solyc03g033660.4.1	GATA5, Solyc03g033660	transcription factor (GATA)	0.03	OrthoFinder output from all 47 species
Zm00001e015260_P001	GATA5, Zm00001e015260	transcription factor (GATA)	0.02	OrthoFinder output from all 47 species
Zm00001e026601_P001	GATA20, Zm00001e026601	transcription factor (GATA)	0.02	OrthoFinder output from all 47 species
Zm00001e032219_P001	GATA12, Zm00001e032219	transcription factor (GATA)	0.03	OrthoFinder output from all 47 species
Zm00001e032513_P001	Zm00001e032513	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0022804	active transmembrane transporter activity	IEP	HCCA
MF	GO:0030234	enzyme regulator activity	IEP	HCCA
MF	GO:0030695	GTPase regulator activity	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	HCCA
MF	GO:0098772	molecular function regulator activity	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140359	ABC-type transporter activity	IEP	HCCA
MF	GO:0140677	molecular function activator activity	IEP	HCCA
MF	GO:0140678	molecular function inhibitor activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000679	Znf_GATA	292	325

External Links

No external refs found!

Msp_g07741 (GATA6)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation