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  5. Msp_g08024

Msp_g08024 (UPF1, ATUPF1, LBA1)


Aliases : UPF1, ATUPF1, LBA1

Description : not classified & original description: none


Gene families : OG0001598 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001598_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g08024
Cluster HCCA: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
Aop_g29541 UPF1, ATUPF1, LBA1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.14G043100.1 UPF1, ATUPF1,... not classified & original description: pacid=50633274... 0.03 OrthoFinder output from all 47 species
Dde_g12727 UPF1, ATUPF1, LBA1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001267 MAA3 not classified & original description: CDS=1577-2170 0.03 OrthoFinder output from all 47 species
Spa_g26397 UPF1, ATUPF1, LBA1 not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR041679 DNA2/NAM7-like_C 571 770
IPR041677 DNA2/NAM7_AAA_11 347 563
No external refs found!