Msp_g08181


Description : ssDNA-binding protein *(OSB) & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g08181

Target Alias Description ECC score Gene Family Method Actions
Adi_g002881 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005491 CRR2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Adi_g015739 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g021050 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g034232 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g060044 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g081792 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g17267 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g30878 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g31944 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g35743 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g05709 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07519 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27006 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g28240 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g37340 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g03649 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g08796 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g17692 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g23956 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g31135 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0095.g043572 No alias not classified & original description: CDS=1-2958 0.04 OrthoFinder output from all 47 species
Azfi_s0095.g043616 No alias not classified & original description: CDS=1-3288 0.03 OrthoFinder output from all 47 species
Azfi_s0099.g044128 No alias not classified & original description: CDS=1-2508 0.05 OrthoFinder output from all 47 species
Cba_g06497 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g18613 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g19309 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g21823 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29963 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g34742 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g43653 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g72789 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g74873 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.13G001600.1 Ceric.13G001600 not classified & original description: pacid=50636694... 0.03 OrthoFinder output from all 47 species
Ceric.37G044800.1 Ceric.37G044800 not classified & original description: pacid=50617007... 0.04 OrthoFinder output from all 47 species
Dde_g08678 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g19657 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_101084g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_10429837g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_24849g0010 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_2991g0010 No alias RNA editing factor (MEF12) 0.04 OrthoFinder output from all 47 species
MA_35442g0010 No alias RNA editing factor (SLO2) 0.04 OrthoFinder output from all 47 species
MA_42343g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_43727g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
MA_71104g0010 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.04 OrthoFinder output from all 47 species
MA_794605g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_958908g0010 OTP84 Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
Nbi_g05790 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g27959 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g41725 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57343 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g06887 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g12011 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g21699 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g35953 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g62370 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g11900 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50566 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g007040.1.1 Solyc09g007040 Pentatricopeptide repeat-containing protein At3g53360,... 0.03 OrthoFinder output from all 47 species
Solyc09g009790.4.1 Solyc09g009790 Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Solyc09g090220.3.1 Solyc09g090220 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Spa_g01746 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g16206 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g16324 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g26279 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g44822 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g46731 EMB2758 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g51293 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g56798 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g06127 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06477 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g44089 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 165 211
IPR002885 Pentatricopeptide_repeat 140 159
No external refs found!