Msp_g09623 (emb1473)

Aliases : emb1473

Description : component *(uL13c) of large plastid ribosomal-subunit proteome & original description: none

Gene families : OG0006254 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006254_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Msp_g09623
Cluster	HCCA: Cluster_34

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00046p00228230	emb1473,...	Protein biosynthesis.organelle translation...	0.06	OrthoFinder output from all 47 species
AT1G78630	emb1473	Ribosomal protein L13 family protein	0.05	OrthoFinder output from all 47 species
Aev_g00534	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Als_g17613	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Aop_g00301	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Aspi01Gene67483.t1	emb1473, Aspi01Gene67483	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Azfi_s0224.g058887	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ceric.14G072800.1	emb1473, Ceric.14G072800	component *(uL13c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Cre06.g264350	emb1473	Protein biosynthesis.organelle translation...	0.05	OrthoFinder output from all 47 species
Dac_g17592	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Dcu_g00726	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Dde_g01255	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
GSVIVT01014101001	emb1473	Protein biosynthesis.organelle translation...	0.09	OrthoFinder output from all 47 species
Gb_28095	emb1473	component psRPL13 of large ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
LOC_Os01g54540.1	emb1473, LOC_Os01g54540	component psRPL13 of large ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
Len_g01005	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Lfl_g03832	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
MA_10433400g0010	emb1473	component psRPL13 of large ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
MA_27171g0010	No alias	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
Mp3g07030.1	emb1473	component psRPL13 of large ribosomal subunit proteome	0.1	OrthoFinder output from all 47 species
Nbi_g04003	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ore_g11308	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Pnu_g03358	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Pp3c24_18330V3.1	emb1473, Pp3c24_18330	Ribosomal protein L13 family protein	0.03	OrthoFinder output from all 47 species
Pp3c8_22490V3.1	emb1473, Pp3c8_22490	Ribosomal protein L13 family protein	0.01	OrthoFinder output from all 47 species
Ppi_g11794	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Sam_g16893	No alias	component *(uL13c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Smo7665	emb1473	Protein biosynthesis.organelle translation...	0.05	OrthoFinder output from all 47 species
Solyc07g062190.4.1	emb1473, Solyc07g062190	component psRPL13 of large ribosomal subunit proteome	0.08	OrthoFinder output from all 47 species
Solyc12g014390.3.1	emb1473, Solyc12g014390	component psRPL13 of large ribosomal subunit proteome	0.08	OrthoFinder output from all 47 species
Spa_g21366	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Tin_g09876	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000774	adenyl-nucleotide exchange factor activity	IEP	HCCA
MF	GO:0002161	aminoacyl-tRNA editing activity	IEP	HCCA
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0004425	indole-3-glycerol-phosphate synthase activity	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0006355	regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009522	photosystem I	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009538	photosystem I reaction center	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0016831	carboxy-lyase activity	IEP	HCCA
BP	GO:0017038	protein import	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
MF	GO:0042802	identical protein binding	IEP	HCCA
MF	GO:0042803	protein homodimerization activity	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
MF	GO:0051087	chaperone binding	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
MF	GO:0060590	ATPase regulator activity	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0098772	molecular function regulator activity	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005822	Ribosomal_L13	99	217

External Links

No external refs found!

Msp_g09623 (emb1473)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation