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  5. Msp_g10633

Msp_g10633


Description : not classified & original description: none


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g10633
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
AT5G01980 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
Als_g13383 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g12129 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aop_g01681 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Azfi_s0051.g031438 No alias not classified & original description: CDS=1-1353 0.03 OrthoFinder output from all 47 species
Cba_g03836 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Cba_g10356 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000880.42 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 47 species
Dac_g04251 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Dcu_g05540 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Dde_g02237 ATCRT1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g51480 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01025505001 ATCRT1 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
LOC_Os03g59760.1 ATCRT1, LOC_Os03g59760 E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
LOC_Os09g06770.1 LOC_Os09g06770 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Lfl_g40832 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_8499g0020 CIP8 E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp3g17850.1 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.02 OrthoFinder output from all 47 species
Pir_g09671 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g06037 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g00999 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g24681 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Tin_g12871 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e037527_P001 Zm00001e037527 E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 300 342
IPR039525 RNF126-like_zinc-ribbon 60 91
No external refs found!