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  5. Msp_g11525

Msp_g11525 (GL19, AGL19)


Aliases : GL19, AGL19

Description : MADS/AGL-type transcription factor & original description: none


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g11525

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00140p00045380 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
Ala_g28879 AGL21 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g11193 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g16338 AGL13 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g28471 SHP2, AGL5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32102 AGL2, SEP1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g11796 AGL104 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene53310.t1 AGL16, Aspi01Gene53310 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0073.g037211 AGL104 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Cba_g07320 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.12G051800.1 GL19, AGL19,... MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Dde_g50123 AGL3, SEP4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g32401 AGL10, CAL1, CAL not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01009393001 AGL104 RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
MA_1767g0010 AGL66 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Pir_g19814 AGL10, CAL1, CAL MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g66755 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003069 No alias not classified & original description: CDS=1-255 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0239.g026596 No alias not classified & original description: CDS=1-651 0.03 OrthoFinder output from all 47 species
Sam_g18792 No alias MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Smo437868 AGL29 RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
Solyc04g076280.4.1 AGL24, Solyc04g076280 MADS-box protein SVP OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Tin_g20318 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002487 TF_Kbox 87 151
IPR002100 TF_MADSbox 10 57
No external refs found!