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  5. Msp_g13210

Msp_g13210 (UPF1, ATUPF1, LBA1)


Aliases : UPF1, ATUPF1, LBA1

Description : Nonsense-Mediated mRNA Decay effector protein *(UPF1) & original description: none


Gene families : OG0001598 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001598_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g13210

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00142490 UPF1, ATUPF1,... RNA processing.RNA decay.Nonsense-Mediated mRNA Decay... 0.07 OrthoFinder output from all 47 species
AT5G47010 UPF1, ATUPF1, LBA1 RNA helicase, putative 0.09 OrthoFinder output from all 47 species
Adi_g042703 UPF1, ATUPF1, LBA1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g055495 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.05 OrthoFinder output from all 47 species
Aev_g29734 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.05 OrthoFinder output from all 47 species
Ala_g16050 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.1 OrthoFinder output from all 47 species
Als_g15234 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.06 OrthoFinder output from all 47 species
Als_g22322 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.05 OrthoFinder output from all 47 species
Aob_g17076 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.03 OrthoFinder output from all 47 species
Aop_g14327 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.02 OrthoFinder output from all 47 species
Azfi_s0128.g048821 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.03 OrthoFinder output from all 47 species
Cba_g31771 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.04 OrthoFinder output from all 47 species
Cba_g36240 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.37G063700.1 UPF1, ATUPF1,... Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.08 OrthoFinder output from all 47 species
Dac_g10431 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.03 OrthoFinder output from all 47 species
Dcu_g11492 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.06 OrthoFinder output from all 47 species
Dcu_g20574 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.08 OrthoFinder output from all 47 species
Ehy_g19605 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.03 OrthoFinder output from all 47 species
GSVIVT01013247001 UPF1, ATUPF1, LBA1 RNA processing.RNA decay.Nonsense-Mediated mRNA Decay... 0.07 OrthoFinder output from all 47 species
Gb_10553 UPF1, ATUPF1, LBA1 UPF1 Nonsense-Mediated mRNA Decay effector protein 0.04 OrthoFinder output from all 47 species
Gb_10556 UPF1, ATUPF1, LBA1 UPF1 Nonsense-Mediated mRNA Decay effector protein 0.04 OrthoFinder output from all 47 species
Gb_22830 UPF1, ATUPF1, LBA1 UPF1 Nonsense-Mediated mRNA Decay effector protein 0.03 OrthoFinder output from all 47 species
LOC_Os07g31340.1 UPF1, ATUPF1,... UPF1 Nonsense-Mediated mRNA Decay effector protein 0.03 OrthoFinder output from all 47 species
Len_g21440 UPF1, ATUPF1, LBA1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10326503g0010 UPF1, ATUPF1, LBA1 UPF1 Nonsense-Mediated mRNA Decay effector protein 0.03 OrthoFinder output from all 47 species
MA_10435183g0010 UPF1, ATUPF1, LBA1 Regulator of nonsense transcripts 1 homolog... 0.03 OrthoFinder output from all 47 species
MA_10436671g0010 UPF1, ATUPF1, LBA1 Regulator of nonsense transcripts 1 homolog... 0.04 OrthoFinder output from all 47 species
Mp1g01200.1 UPF1, ATUPF1, LBA1 UPF1 Nonsense-Mediated mRNA Decay effector protein 0.04 OrthoFinder output from all 47 species
Pir_g11844 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.04 OrthoFinder output from all 47 species
Ppi_g52670 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004722 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.03 OrthoFinder output from all 47 species
Sam_g25380 No alias Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.03 OrthoFinder output from all 47 species
Sam_g25381 No alias Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.03 OrthoFinder output from all 47 species
Solyc08g007110.4.1 UPF1, ATUPF1,... UPF1 Nonsense-Mediated mRNA Decay effector protein 0.02 OrthoFinder output from all 47 species
Solyc08g077420.3.1 UPF1, ATUPF1,... UPF1 Nonsense-Mediated mRNA Decay effector protein 0.07 OrthoFinder output from all 47 species
Spa_g48750 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.07 OrthoFinder output from all 47 species
Zm00001e010427_P002 UPF1, ATUPF1,... UPF1 Nonsense-Mediated mRNA Decay effector protein 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
InterPro domains Description Start Stop
IPR018999 UPF1_CH/ZBD 154 305
IPR006935 Helicase/UvrB_N 504 570
IPR041679 DNA2/NAM7-like_C 715 910
IPR041677 DNA2/NAM7_AAA_11 608 705
IPR040812 UPF1_1B_dom 357 446
No external refs found!