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  5. Msp_g13248

Msp_g13248


Description : not classified & original description: none


Gene families : OG0007570 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007570_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g13248

Target Alias Description ECC score Gene Family Method Actions
LOC_Os05g34880.1 LOC_Os05g34880 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Sam_g19358 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc11g005030.3.1 Solyc11g005030 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 657 688
IPR001680 WD40_repeat 610 649
IPR001680 WD40_repeat 528 560
IPR027370 Znf-RING_euk 6 60
No external refs found!