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  5. Msp_g13409

Msp_g13409


Description : component *(NSP2) of NSP1-NSP2 nodulation initiation complex & original description: none


Gene families : OG0002153 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002153_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g13409
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00099410 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.GRAS... 0.03 OrthoFinder output from all 47 species
Adi_g055203 No alias GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g17407 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.04 OrthoFinder output from all 47 species
Ala_g11867 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.03 OrthoFinder output from all 47 species
Aob_g09046 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.03 OrthoFinder output from all 47 species
Ceric.18G071500.1 Ceric.18G071500 component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.04 OrthoFinder output from all 47 species
Ceric.20G083700.1 Ceric.20G083700 component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.04 OrthoFinder output from all 47 species
Ceric.37G042000.1 Ceric.37G042000 component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.03 OrthoFinder output from all 47 species
Dcu_g19937 RGA2, GAI GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008901001 No alias External stimuli response.biotic... 0.03 OrthoFinder output from all 47 species
Gb_25709 No alias transcription factor (GRAS). component NSP2 of NSP1-NSP2... 0.01 OrthoFinder output from all 47 species
Lfl_g04942 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.03 OrthoFinder output from all 47 species
Nbi_g12779 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.03 OrthoFinder output from all 47 species
Ore_g28747 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.02 OrthoFinder output from all 47 species
Ore_g28748 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.05 OrthoFinder output from all 47 species
Ore_g30474 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.04 OrthoFinder output from all 47 species
Pir_g16636 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.04 OrthoFinder output from all 47 species
Pnu_g24950 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0183.g024925 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.04 OrthoFinder output from all 47 species
Spa_g07286 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.06 OrthoFinder output from all 47 species
Spa_g22375 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g25920 No alias GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g10282 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR005202 TF_GRAS 486 855
No external refs found!