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  5. Msp_g13457

Msp_g13457 (SOC1, AGL20, ATSOC1)


Aliases : SOC1, AGL20, ATSOC1

Description : MADS/AGL-type transcription factor & original description: none


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g13457

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00244880 AGL61, DIA,... RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
Ala_g37796 AGL2, SEP1 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g28471 SHP2, AGL5 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene72145.t2 AGL30, Aspi01Gene72145 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0016.g014288 No alias MADS/AGL-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0043.g027077 AGL30 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Cba_g13784 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g27765 AGL30 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.12G051800.1 GL19, AGL19,... MADS/AGL-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Dde_g10603 AGL42 MADS/AGL-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Dde_g30507 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g50123 AGL3, SEP4 not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01012110001 AGL32, TT16, ABS RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
GSVIVT01025945001 STK, AGL11 RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
GSVIVT01026207001 AGL32, TT16, ABS RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
LOC_Os01g69850.1 AGL79, LOC_Os01g69850 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
LOC_Os04g23910.1 AGL16, LOC_Os04g23910 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Len_g04127 AGL42 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Len_g26280 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_491676g0010 AGL6 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
Msp_g31321 AGL16 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g39561 AGL16 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g05686 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g41761 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g28516 AGL66 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g19814 AGL10, CAL1, CAL MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g58877 AGL30 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g29613 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g02675 AGL7, AP1 MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g33045 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g41504 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g57086 GL19, AGL19 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g61246 AGL21 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0239.g026596 No alias not classified & original description: CDS=1-651 0.03 OrthoFinder output from all 47 species
Sam_g26111 No alias MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g35224 No alias MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Smo437868 AGL29 RNA biosynthesis.transcriptional activation.MADS box... 0.04 OrthoFinder output from all 47 species
Spa_g16602 AGL16 MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g20318 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0020037 heme binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 68 115
No external refs found!