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  5. Msp_g13825

Msp_g13825 (HSS, ARF1-BP, ARF2, ORE14)


Aliases : HSS, ARF1-BP, ARF2, ORE14

Description : ARF-type transcription factor & original description: none


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g13825

Target Alias Description ECC score Gene Family Method Actions
Adi_g014256 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g080414 ARF19, IAA22, ARF11 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02130 ARF16 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g06737 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g09257 ARF19, IAA22, ARF11 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26859 ARF19, IAA22, ARF11 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01032251001 ARF19, IAA22, ARF11 RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
GSVIVT01037136001 ARF1 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
Gb_32864 ARF6 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
LOC_Os10g33940.1 ARF16, LOC_Os10g33940 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Nbi_g13886 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30357 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g27620 ARF4 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g29453 ARF1 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g30394 No alias ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g077560.3.1 ARF3, ETT, Solyc02g077560 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Spa_g20525 ARF6 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e028396_P001 HSS, ARF1-BP,... transcription factor (ARF) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
InterPro domains Description Start Stop
IPR010525 ARF_dom 291 373
IPR003340 B3_DNA-bd 166 267
IPR033389 AUX/IAA_dom 826 865
No external refs found!