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  5. Msp_g14175

Msp_g14175 (ARF6)


Aliases : ARF6

Description : ARF-type transcription factor & original description: none


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g14175
Cluster HCCA: Cluster_220

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00157690 ARF6,... RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
AT2G33860 ARF3, ETT Transcriptional factor B3 family protein /... 0.02 OrthoFinder output from all 47 species
AT5G37020 ARF8, ATARF8 auxin response factor 8 0.02 OrthoFinder output from all 47 species
Adi_g080414 ARF19, IAA22, ARF11 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g103007 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g11014 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g14726 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32730 TIR5, MSG1,... ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33345 ARF6 ARF-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g22075 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27918 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g21442 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g11427 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.20G087500.1 ARF1, Ceric.20G087500 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.30G022300.1 ARF6, Ceric.30G022300 ARF-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Ehy_g30682 ARF10 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01011008001 HSS, ARF1-BP, ARF2, ORE14 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
GSVIVT01021552001 ARF6 RNA biosynthesis.transcriptional activation.B3... 0.06 OrthoFinder output from all 47 species
GSVIVT01025691001 ARF16 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
LOC_Os04g43910.1 ARF10, LOC_Os04g43910 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
LOC_Os04g56850.1 MP, IAA24, ARF5,... transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Lfl_g18657 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Mp1g12750.1 ARF6 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0042.g012712 ARF6 ARF-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Solyc03g031970.4.1 ARF8, ATARF8,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Solyc05g047460.3.1 ARF19, IAA22,... transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Solyc07g016180.3.1 ARF19, IAA22,... transcription factor (ARF) 0.05 OrthoFinder output from all 47 species
Solyc12g042070.3.1 HSS, ARF1-BP,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Spa_g29254 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g27871 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e003229_P002 ARF6, Zm00001e003229 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e006577_P003 ARF8, ATARF8,... transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Zm00001e006640_P002 MP, IAA24, ARF5,... transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Zm00001e013191_P001 ARF19, IAA22,... transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Zm00001e014833_P002 ARF1, Zm00001e014833 transcription factor (ARF) 0.05 OrthoFinder output from all 47 species
Zm00001e017798_P003 HSS, ARF1-BP,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e018126_P002 ARF6, Zm00001e018126 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Zm00001e018761_P001 HSS, ARF1-BP,... transcription factor (ARF) 0.06 OrthoFinder output from all 47 species
Zm00001e025163_P001 ARF6, Zm00001e025163 transcription factor (ARF) 0.06 OrthoFinder output from all 47 species
Zm00001e041910_P003 ARF8, ATARF8,... transcription factor (ARF) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
InterPro domains Description Start Stop
IPR033389 AUX/IAA_dom 915 1000
IPR010525 ARF_dom 241 323
IPR003340 B3_DNA-bd 114 215
No external refs found!