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  5. Msp_g14279

Msp_g14279


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g14279

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00263110 No alias Pentatricopeptide repeat-containing protein At1g03540... 0.02 OrthoFinder output from all 47 species
AMTR_s00008p00241920 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
AMTR_s00033p00240190 evm_27.TU.AmTr_v1... Cell cycle.organelle machineries.DNA... 0.02 OrthoFinder output from all 47 species
AMTR_s00046p00214930 CRR22,... Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
AMTR_s00066p00062930 EMB2261,... Pentatricopeptide repeat-containing protein At3g49170,... 0.03 OrthoFinder output from all 47 species
AT1G15510 VAC1, ECB2, ATECB2 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G31920 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G47580 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G66520 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g004418 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g067972 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g42356 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02938 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g26450 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36514 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07515 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19033 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19051 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19294 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g28002 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30901 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g55325 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g57094 OTP86 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27000 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g16691 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28235 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene00343.t1 Aspi01Gene00343 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene07235.t1 REME1, Aspi01Gene07235 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene12035.t1 Aspi01Gene12035 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene40269.t1 Aspi01Gene40269 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0048.g030454 No alias not classified & original description: CDS=2-2074 0.04 OrthoFinder output from all 47 species
Azfi_s0059.g034605 No alias ssDNA-binding protein *(OSB) & original description: CDS=21-2777 0.03 OrthoFinder output from all 47 species
Cba_g06492 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06552 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07228 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07719 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g19886 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20853 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g35199 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g36226 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67848 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.14G058600.1 PTAC9, OSB2,... ssDNA-binding protein *(OSB) & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g35559 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g38523 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g39176 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g43122 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g17215 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22014 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23619 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g24902 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g28518 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g35714 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46329 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g26930 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g31027 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01009227001 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
GSVIVT01013023001 No alias Pentatricopeptide repeat-containing protein At1g31920... 0.03 OrthoFinder output from all 47 species
LOC_Os03g58100.1 OTP85, LOC_Os03g58100 RNA editing factor (OTP85) 0.03 OrthoFinder output from all 47 species
Len_g02909 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17531 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18265 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g19023 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g35930 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10432670g0020 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
MA_139163g0010 CRR22 Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Msp_g04332 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g06349 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g17336 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g15290 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27720 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g30346 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g01886 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g17481 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g40238 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g07132 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06959 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18431 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g52997 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001817 No alias not classified & original description: CDS=1-3483 0.04 OrthoFinder output from all 47 species
Sam_g01747 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g02933 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24781 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g26606 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g35116 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g38450 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g50428 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo105356 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.02 OrthoFinder output from all 47 species
Smo47998 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.02 OrthoFinder output from all 47 species
Solyc01g098150.3.1 emb1899, EMB175,... Pentatricopeptide repeat-containing protein At5g03800... 0.03 OrthoFinder output from all 47 species
Solyc11g066920.1.1 CRR28, Solyc11g066920 Pentatricopeptide repeat-containing protein At4g21065... 0.03 OrthoFinder output from all 47 species
Solyc12g042400.1.1 SLO1, Solyc12g042400 Pentatricopeptide repeat-containing protein At2g29760,... 0.02 OrthoFinder output from all 47 species
Spa_g10760 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g16563 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g56367 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06522 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08446 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e022253_P001 Zm00001e022253 Pentatricopeptide repeat-containing protein At1g59720,... 0.04 OrthoFinder output from all 47 species
Zm00001e023498_P001 VAC1, ECB2,... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Zm00001e029186_P001 Zm00001e029186 Pentatricopeptide repeat-containing protein At1g19720... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 162 184
IPR002885 Pentatricopeptide_repeat 501 526
IPR002885 Pentatricopeptide_repeat 770 792
IPR002885 Pentatricopeptide_repeat 670 690
IPR002885 Pentatricopeptide_repeat 289 335
IPR002885 Pentatricopeptide_repeat 696 743
IPR002885 Pentatricopeptide_repeat 390 437
IPR002885 Pentatricopeptide_repeat 188 234
IPR002885 Pentatricopeptide_repeat 594 643
No external refs found!