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  5. Msp_g14847

Msp_g14847


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g14847
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00257350 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
AMTR_s00022p00232590 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
AMTR_s00053p00090700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g13880... 0.03 OrthoFinder output from all 47 species
AMTR_s00061p00035580 No alias Pentatricopeptide repeat-containing protein At5g44230... 0.03 OrthoFinder output from all 47 species
AMTR_s00063p00172440 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
AMTR_s00078p00067180 EMB2261,... Pentatricopeptide repeat-containing protein At2g46050,... 0.02 OrthoFinder output from all 47 species
AMTR_s00109p00094190 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g04780,... 0.03 OrthoFinder output from all 47 species
AMTR_s00170p00032020 OTP86,... Pentatricopeptide repeat-containing protein At5g16860... 0.03 OrthoFinder output from all 47 species
AT1G11290 CRR22 Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G15510 VAC1, ECB2, ATECB2 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G77010 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G01510 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G01030 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 OrthoFinder output from all 47 species
AT4G16470 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G25270 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G03800 emb1899, EMB175, EMB166 Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g033552 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036834 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058156 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g060792 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g061031 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g067784 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g096783 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g098996 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g29185 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g37660 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16565 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g17262 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g07162 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07446 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g14743 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19242 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26653 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g30203 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30309 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30822 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g62017 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g07964 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g08304 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g10709 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g24083 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27600 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g28209 DOT4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene02536.t1 Aspi01Gene02536 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene14256.t1 Aspi01Gene14256 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene34823.t1 Aspi01Gene34823 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0004.g008405 No alias not classified & original description: CDS=233-2125 0.03 OrthoFinder output from all 47 species
Azfi_s0028.g023878 No alias not classified & original description: CDS=1-2883 0.03 OrthoFinder output from all 47 species
Azfi_s0035.g025724 No alias not classified & original description: CDS=1-3840 0.06 OrthoFinder output from all 47 species
Azfi_s0054.g033714 CRR22 not classified & original description: CDS=1-1803 0.03 OrthoFinder output from all 47 species
Azfi_s0104.g044765 No alias not classified & original description: CDS=1-2373 0.05 OrthoFinder output from all 47 species
Azfi_s0250.g060212 CRR22 not classified & original description: CDS=1-2343 0.03 OrthoFinder output from all 47 species
Azfi_s0880.g091024 No alias not classified & original description: CDS=182-3622 0.04 OrthoFinder output from all 47 species
Cba_g05154 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g06583 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g31685 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g34643 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g35120 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g45906 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.07G016600.1 Ceric.07G016600 not classified & original description: pacid=50626137... 0.05 OrthoFinder output from all 47 species
Ceric.1Z045400.1 Ceric.1Z045400 not classified & original description: pacid=50637450... 0.04 OrthoFinder output from all 47 species
Ceric.36G058400.1 Ceric.36G058400 not classified & original description: pacid=50568396... 0.04 OrthoFinder output from all 47 species
Dac_g21976 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g30415 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g43248 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g05756 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07645 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g38580 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g02867 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g09173 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22734 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28218 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g13211 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g14557 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19229 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01009574001 OSB1 Cell cycle.organelle machineries.DNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01028819001 No alias Pentatricopeptide repeat-containing protein At5g52850,... 0.03 OrthoFinder output from all 47 species
GSVIVT01029885001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os01g74600.1 CRR22, LOC_Os01g74600 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
LOC_Os07g46770.1 LOC_Os07g46770 Pentatricopeptide repeat-containing protein At4g21065... 0.03 OrthoFinder output from all 47 species
LOC_Os11g01836.1 LOC_Os11g01836 Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Len_g03311 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g07742 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18191 OTP86 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18261 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18587 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g41529 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g05637 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06226 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06637 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07663 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g08093 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g14103 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g28060 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g29257 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g37426 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10433543g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
MA_482767g0010 OTP84 Pentatricopeptide repeat-containing protein At1g20230... 0.03 OrthoFinder output from all 47 species
MA_9463538g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
Ore_g12690 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g22640 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g03406 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12550 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13341 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g13390 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13622 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g44175 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g64725 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g12890 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g17077 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g23106 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g02982 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06929 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g08728 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g12921 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g16080 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18809 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31871 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g33128 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g40150 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g40980 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g53545 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53972 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56487 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g58878 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59234 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009200 OTP82 not classified & original description: CDS=343-1080 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014379 CRR22 not classified & original description: CDS=1-2430 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0085.g018372 No alias not classified & original description: CDS=50-2203 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0111.g020713 No alias not classified & original description: CDS=1-3843 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0153.g023499 No alias not classified & original description: CDS=1-1593 0.05 OrthoFinder output from all 47 species
Sam_g07135 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g08926 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g13838 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g15563 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24540 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29293 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g35736 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo123298 OTP84 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Smo150748 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
Spa_g01102 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g02585 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g28927 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g53279 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g04160 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g07619 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g27040 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g44234 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g45240 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e029119_P001 Zm00001e029119 Pentatricopeptide repeat-containing protein At2g33760... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 292 313
IPR002885 Pentatricopeptide_repeat 491 516
IPR002885 Pentatricopeptide_repeat 553 581
IPR002885 Pentatricopeptide_repeat 318 362
IPR002885 Pentatricopeptide_repeat 217 263
IPR002885 Pentatricopeptide_repeat 114 164
IPR002885 Pentatricopeptide_repeat 415 463
No external refs found!