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  5. Msp_g16105

Msp_g16105


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g16105

Target Alias Description ECC score Gene Family Method Actions
Adi_g003168 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g003796 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g23947 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g62756 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0003.g007676 No alias not classified & original description: CDS=1-2364 0.04 OrthoFinder output from all 47 species
Azfi_s0022.g016134 OTP84 not classified & original description: CDS=1-2358 0.03 OrthoFinder output from all 47 species
Azfi_s0210.g058082 No alias not classified & original description: CDS=1-2637 0.03 OrthoFinder output from all 47 species
Azfi_s3912.g117324 No alias not classified & original description: CDS=1-774 0.04 OrthoFinder output from all 47 species
Cba_g20681 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g25034 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67281 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.09G062300.1 Ceric.09G062300 not classified & original description: pacid=50587557... 0.03 OrthoFinder output from all 47 species
Ceric.14G013800.1 Ceric.14G013800 not classified & original description: pacid=50633719... 0.04 OrthoFinder output from all 47 species
Dac_g43258 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g49796 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g50023 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16077 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g51266 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01007811001 No alias Pentatricopeptide repeat-containing protein At3g22690... 0.03 OrthoFinder output from all 47 species
GSVIVT01035491001 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
LOC_Os01g27650.1 LOC_Os01g27650 Pentatricopeptide repeat-containing protein At2g33680... 0.04 OrthoFinder output from all 47 species
LOC_Os05g24150.1 LOC_Os05g24150 Pentatricopeptide repeat-containing protein At2g34400... 0.02 OrthoFinder output from all 47 species
Len_g26289 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_30949g0010 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
MA_65500g0010 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.03 OrthoFinder output from all 47 species
Msp_g04475 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g34313 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g44115 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g02265 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57217 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57724 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63892 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0168.g024290 No alias not classified & original description: CDS=1-2301 0.03 OrthoFinder output from all 47 species
Sam_g02929 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g17751 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27568 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g38969 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g23253 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g35497 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g44225 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g44315 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 318 337
IPR002885 Pentatricopeptide_repeat 548 578
IPR002885 Pentatricopeptide_repeat 217 242
IPR002885 Pentatricopeptide_repeat 649 679
IPR002885 Pentatricopeptide_repeat 447 477
IPR002885 Pentatricopeptide_repeat 621 642
IPR002885 Pentatricopeptide_repeat 924 945
IPR002885 Pentatricopeptide_repeat 346 374
IPR002885 Pentatricopeptide_repeat 245 274
IPR002885 Pentatricopeptide_repeat 519 546
IPR002885 Pentatricopeptide_repeat 141 188
IPR002885 Pentatricopeptide_repeat 747 794
IPR046848 E_motif 966 1027
No external refs found!