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  5. Msp_g20330

Msp_g20330 (ATL2, TL2)


Aliases : ATL2, TL2

Description : RING-H2-class ATL-subclass E3 ubiquitin ligase & original description: none


Gene families : OG0000008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g20330
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00271850 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.05 OrthoFinder output from all 47 species
AMTR_s00008p00200880 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
AT1G20823 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G35330 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G53010 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G63840 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT2G17450 RHA3A RING-H2 finger A3A 0.02 OrthoFinder output from all 47 species
AT2G35910 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G42350 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G05200 ATL6 RING/U-box superfamily protein 0.06 OrthoFinder output from all 47 species
AT5G27420 ATL31, CNI1 carbon/nitrogen insensitive 1 0.02 OrthoFinder output from all 47 species
Adi_g118032 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aev_g09630 BRH1 E3 ubiquitin ligase *(BRH) & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g13880 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.06 OrthoFinder output from all 47 species
Aev_g39979 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.07 OrthoFinder output from all 47 species
Aev_g40193 BRH1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g15539 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Als_g24156 ATL5 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Als_g46662 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene00937.t1 BRH1, Aspi01Gene00937 E3 ubiquitin ligase *(BRH) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene12542.t1 Aspi01Gene12542 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene13378.t1 Aspi01Gene13378 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene20552.t1 Aspi01Gene20552 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene46827.t1 ATL2, TL2,... RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene52668.t1 ATL2, TL2,... RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Aspi01Gene70839.t1 Aspi01Gene70839 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ceric.09G083300.1 Ceric.09G083300 not classified & original description: pacid=50586861... 0.03 OrthoFinder output from all 47 species
Ceric.09G091300.1 Ceric.09G091300 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ceric.12G015900.1 Ceric.12G015900 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ceric.25G002800.1 Ceric.25G002800 not classified & original description: pacid=50594229... 0.04 OrthoFinder output from all 47 species
Dac_g05542 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Dac_g22588 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Dac_g32939 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Dac_g41851 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g44213 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g00774 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Dcu_g00960 ATL6 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Dcu_g05475 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Dcu_g12448 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.11 OrthoFinder output from all 47 species
Dcu_g18286 BRH1 E3 ubiquitin ligase *(BRH) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g25638 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Dde_g09730 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26838 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
GSVIVT01000015001 ATL6 Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
GSVIVT01000538001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
LOC_Os01g11520.1 LOC_Os01g11520 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os01g53500.1 LOC_Os01g53500 RING-H2 finger protein ATL68 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os01g55110.1 LOC_Os01g55110 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os02g14990.1 LOC_Os02g14990 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os02g45390.1 LOC_Os02g45390 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
LOC_Os02g45710.1 BRH1, LOC_Os02g45710 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os03g44636.1 LOC_Os03g44636 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os04g37740.1 ATRING1, RING1,... RING-H2-class E3 ligase 0.05 OrthoFinder output from all 47 species
LOC_Os09g36500.1 RHA3A, LOC_Os09g36500 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g23800 BRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g22489 RHA3A RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
MA_10436650g0010 ATL2, TL2 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
MA_105533g0010 ATL8 RING-H2 finger protein ATL74 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_159453g0010 No alias RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
MA_229590g0010 No alias RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
MA_80729g0030 ATL2, TL2 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
MA_904294g0010 ATL3 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Mp1g27170.1 No alias RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Msp_g13489 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ore_g10431 XERICO not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g30955 XERICO not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43979 ATL6 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Pnu_g03091 BRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g43947 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g46048 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017128 No alias not classified & original description: CDS=1-1311 0.03 OrthoFinder output from all 47 species
Solyc01g066430.3.1 ATL2, TL2, Solyc01g066430 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Solyc01g088440.2.1 Solyc01g088440 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc03g083460.3.1 Solyc03g083460 RING-H2 finger protein ATL22 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc03g112340.1.1 ATL31, CNI1,... RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Solyc03g123680.1.1 Solyc03g123680 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Solyc10g008080.3.1 Solyc10g008080 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Solyc12g055710.1.1 ATL3, Solyc12g055710 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Solyc12g087840.1.1 Solyc12g087840 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Solyc12g087860.3.1 ATL6, Solyc12g087860 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Spa_g02204 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Spa_g20845 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g37346 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.07 OrthoFinder output from all 47 species
Spa_g54510 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Tin_g20442 ATL2, TL2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g37222 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquiTin ligase &... 0.04 OrthoFinder output from all 47 species
Zm00001e000398_P001 Zm00001e000398 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e003264_P001 Zm00001e003264 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e007129_P001 Zm00001e007129 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e007956_P001 ATRING1, RING1,... RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e007957_P001 ATL6, Zm00001e007957 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e016470_P001 Zm00001e016470 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e016474_P001 Zm00001e016474 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e017960_P001 RHA3A, Zm00001e017960 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e019779_P001 Zm00001e019779 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e020958_P001 Zm00001e020958 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e023515_P001 Zm00001e023515 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e030930_P001 ATL3, Zm00001e030930 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e031874_P001 Zm00001e031874 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e034421_P001 ATL6, Zm00001e034421 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e035560_P001 ATL3, Zm00001e035560 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e039357_P001 Zm00001e039357 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 143 186
No external refs found!