Msp_g20906 (ATARFA1B, ARFA1B)

Aliases : ATARFA1B, ARFA1B

Description : ARF-GTPase *(ARF1) & original description: none

Gene families : OG0000301 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000301_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Msp_g20906
Cluster	HCCA: Cluster_168

Target	Alias	Description	ECC score	Gene Family Method
AT1G10630	ATARFA1F, ARFA1F	ADP-ribosylation factor A1F	0.03	OrthoFinder output from all 47 species
AT1G70490	ARFA1D, ATARFA1D	Ras-related small GTP-binding family protein	0.03	OrthoFinder output from all 47 species
Adi_g024167	ATARFA1B, ARFA1B	ARF-GTPase *(ARF1) & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g06715	ATARF1, ARF1,...	ARF-GTPase *(ARF1) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g08438	ARFA1E, ATARFA1E	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g38491	ATARFA1F, ARFA1F	ARF-GTPase *(ARF1) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g50924	ARFA1E, ATARFA1E	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ceric.25G015600.1	ATARFA1B,...	ARF-GTPase *(ARF1) & original description:...	0.03	OrthoFinder output from all 47 species
Dde_g11090	ATARFA1F, ARFA1F	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g26837	ATARFA1B, ARFA1B	ARF-GTPase *(ARF1) & original description: none	0.06	OrthoFinder output from all 47 species
Lfl_g05175	ATARFA1F, ARFA1F	ARF-GTPase *(ARF1) & original description: none	0.05	OrthoFinder output from all 47 species
Lfl_g33269	ATARFA1F, ARFA1F	ARF-GTPase *(ARF1) & original description: none	0.05	OrthoFinder output from all 47 species
Mp2g14560.1	ATARFA1F, ARFA1F	ARF-GTPase	0.02	OrthoFinder output from all 47 species
Ppi_g43193	ATARFA1F, ARFA1F	ARF-GTPase *(ARF1) & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0106.g020267	ATARFA1B, ARFA1B	ARF-GTPase *(ARF1) & original description: CDS=156-554	0.03	OrthoFinder output from all 47 species
Smo140818	ATARFA1B, ARFA1B	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.02	OrthoFinder output from all 47 species
Spa_g49716	ATARFA1B, ARFA1B	ARF-GTPase *(ARF1) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g49718	ATARFA1F, ARFA1F	ARF-GTPase *(ARF1) & original description: none	0.05	OrthoFinder output from all 47 species
Spa_g51173	ATARFA1F, ARFA1F	ARF-GTPase *(ARF1) & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004764	shikimate 3-dehydrogenase (NADP+) activity	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006812	monoatomic cation transport	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
MF	GO:0030246	carbohydrate binding	IEP	HCCA
MF	GO:0030247	polysaccharide binding	IEP	HCCA
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA
BP	GO:1902600	proton transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006689	Small_GTPase_ARF/SAR	1	160

External Links

No external refs found!

Msp_g20906 (ATARFA1B, ARFA1B)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation