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  5. Msp_g22299

Msp_g22299


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g22299

Target Alias Description ECC score Gene Family Method Actions
AT3G49170 EMB2261 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Aev_g06254 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g42281 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g44160 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g48329 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g17191 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g18613 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g22271 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g24410 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g25155 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g36537 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g36547 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g06307 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19032 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g28195 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g08870 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g09609 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g16384 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g16770 CRR22 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g17318 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g21473 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g26368 No alias ssDNA-binding protein *(OSB) & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g28410 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g33111 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g35962 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Aop_g38034 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g68053 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g68065 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene02464.t1 Aspi01Gene02464 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene18163.t1 CRR22, Aspi01Gene18163 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene22525.t1 REME1, Aspi01Gene22525 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene25991.t2 Aspi01Gene25991 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene34702.t1 Aspi01Gene34702 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34740.t1 Aspi01Gene34740 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34796.t1 EMB2758, Aspi01Gene34796 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene36242.t1 VAC1, ECB2,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene43278.t1 Aspi01Gene43278 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene44213.t1 Aspi01Gene44213 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene61369.t1 CRR22, Aspi01Gene61369 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0119.g046740 No alias not classified & original description: CDS=1-2259 0.06 OrthoFinder output from all 47 species
Cba_g19570 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g29847 OTP86 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g35114 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g46020 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g67737 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.01G121800.1 Ceric.01G121800 not classified & original description: pacid=50593016... 0.06 OrthoFinder output from all 47 species
Ceric.13G082600.1 Ceric.13G082600 not classified & original description: pacid=50636923... 0.03 OrthoFinder output from all 47 species
Ceric.16G050700.1 Ceric.16G050700 not classified & original description: pacid=50589143... 0.06 OrthoFinder output from all 47 species
Ceric.23G019700.1 Ceric.23G019700 not classified & original description: pacid=50611424... 0.06 OrthoFinder output from all 47 species
Ceric.25G002100.1 Ceric.25G002100 not classified & original description: pacid=50593112... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001657.6 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g08356 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g12138 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g13534 No alias ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Dac_g18257 REME1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dac_g30123 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g30156 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g38008 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g42852 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g43213 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g43258 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Len_g54971 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10433543g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_124868g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_138689g0010 OTP84 Pentatricopeptide repeat-containing protein At2g27610... 0.07 OrthoFinder output from all 47 species
MA_6527g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Msp_g17711 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g28772 No alias ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g36814 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g18027 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g28137 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g38632 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g14351 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g03285 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g03458 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pnu_g03818 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g22252 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g25238 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pp3c17_4890V3.1 Pp3c17_4890 mitochondrial editing factor 22 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0093.g019124 No alias not classified & original description: CDS=1-405 0.05 OrthoFinder output from all 47 species
Sam_g16791 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29120 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g33990 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo105729 No alias Pentatricopeptide repeat-containing protein At2g03380,... 0.05 OrthoFinder output from all 47 species
Spa_g06827 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g09894 CRR2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g12240 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g32996 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g55036 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 177 225
IPR002885 Pentatricopeptide_repeat 685 733
IPR002885 Pentatricopeptide_repeat 484 531
IPR002885 Pentatricopeptide_repeat 382 429
IPR002885 Pentatricopeptide_repeat 280 328
IPR002885 Pentatricopeptide_repeat 152 174
IPR002885 Pentatricopeptide_repeat 557 583
IPR002885 Pentatricopeptide_repeat 79 107
IPR002885 Pentatricopeptide_repeat 588 617
IPR002885 Pentatricopeptide_repeat 760 784
IPR002885 Pentatricopeptide_repeat 357 381
IPR002885 Pentatricopeptide_repeat 253 276
No external refs found!