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  5. Msp_g22644

Msp_g22644


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g22644

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0001.g000730 No alias not classified & original description: CDS=1-2529 0.07 OrthoFinder output from all 47 species
Azfi_s0270.g061187 No alias not classified & original description: CDS=1-3441 0.06 OrthoFinder output from all 47 species
Cba_g70891 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.19G069600.1 Ceric.19G069600 not classified & original description: pacid=50575437... 0.05 OrthoFinder output from all 47 species
Ehy_g12271 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01000034001 MEF19 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
MA_20782g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.05 OrthoFinder output from all 47 species
Msp_g03763 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g46446 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g25357 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0092.g018986 No alias not classified & original description: CDS=1-1941 0.02 OrthoFinder output from all 47 species
Smo117959 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.05 OrthoFinder output from all 47 species
Smo132819 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Spa_g18196 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g53271 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g53488 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g54234 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e007462_P001 Zm00001e007462 Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 180 224
IPR002885 Pentatricopeptide_repeat 382 428
IPR002885 Pentatricopeptide_repeat 75 123
IPR002885 Pentatricopeptide_repeat 280 326
IPR002885 Pentatricopeptide_repeat 356 378
IPR002885 Pentatricopeptide_repeat 455 477
IPR002885 Pentatricopeptide_repeat 50 71
IPR002885 Pentatricopeptide_repeat 152 176
No external refs found!