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  5. Msp_g23962

Msp_g23962 (ATVPS54, VPS54)


Aliases : ATVPS54, VPS54

Description : GARP-specific component *(VPS54) of GARP/EARP (Golgi-/Endosome-Associated-Retrograde-Protein) complexes & original description: none


Gene families : OG0004672 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004672_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g23962

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00072p00168660 ATVPS54, VPS54,... Vesicle trafficking.target membrane tethering.GARP/EARP... 0.02 OrthoFinder output from all 47 species
AT4G19490 ATVPS54, VPS54 VPS54 0.03 OrthoFinder output from all 47 species
Adi_g063596 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Ala_g02680 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.05 OrthoFinder output from all 47 species
Aob_g22183 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Ceric.15G033300.1 ATVPS54, VPS54,... GARP-specific component *(VPS54) of GARP/EARP... 0.05 OrthoFinder output from all 47 species
Cre02.g087551 ATVPS54, VPS54 Vesicle trafficking.target membrane tethering.GARP/EARP... 0.02 OrthoFinder output from all 47 species
Dcu_g12433 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.05 OrthoFinder output from all 47 species
Dde_g11326 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.05 OrthoFinder output from all 47 species
GSVIVT01037972001 ATVPS54, VPS54 Vesicle trafficking.target membrane tethering.GARP/EARP... 0.05 OrthoFinder output from all 47 species
Gb_03763 ATVPS54, VPS54 GARP-specific component VPS54 of GARP/EARP... 0.02 OrthoFinder output from all 47 species
LOC_Os04g13470.1 ATVPS54, VPS54,... GARP-specific component VPS54 of GARP/EARP... 0.07 OrthoFinder output from all 47 species
Lfl_g02410 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Mp5g09490.1 ATVPS54, VPS54 GARP-specific component VPS54 of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Nbi_g16046 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.04 OrthoFinder output from all 47 species
Sam_g10508 No alias GARP-specific component *(VPS54) of GARP/EARP... 0.05 OrthoFinder output from all 47 species
Solyc02g030110.2.1 ATVPS54, VPS54,... GARP-specific component VPS54 of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Zm00001e008702_P001 ATVPS54, VPS54,... GARP-specific component VPS54 of GARP/EARP... 0.1 OrthoFinder output from all 47 species
Zm00001e040599_P001 ATVPS54, VPS54,... GARP-specific component VPS54 of GARP/EARP... 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0042147 retrograde transport, endosome to Golgi IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR012501 Vps54_C 869 1000
No external refs found!