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  5. Msp_g26122

Msp_g26122


Description : heavy chain of clathrin triskelion & original description: none


Gene families : OG0002108 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002108_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g26122
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
AT3G11130 No alias Clathrin, heavy chain 0.06 OrthoFinder output from all 47 species
Adi_g011980 No alias heavy chain of clathrin triskelion & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g12409 No alias heavy chain of clathrin triskelion & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g02408 No alias heavy chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0021.g015746 No alias heavy chain of clathrin triskelion & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0078.g038251 No alias heavy chain of clathrin triskelion & original... 0.03 OrthoFinder output from all 47 species
Cba_g27951 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.06G067200.1 Ceric.06G067200 heavy chain of clathrin triskelion & original... 0.04 OrthoFinder output from all 47 species
Ceric.1Z011000.1 Ceric.1Z011000 heavy chain of clathrin triskelion & original... 0.03 OrthoFinder output from all 47 species
Dac_g02387 No alias heavy chain of clathrin triskelion & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g02059 No alias heavy chain of clathrin triskelion & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g09904 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01024708001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.03 OrthoFinder output from all 47 species
GSVIVT01032792001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.04 OrthoFinder output from all 47 species
Gb_33028 No alias heavy chain of clathrin triskelion 0.03 OrthoFinder output from all 47 species
Gb_33029 No alias Clathrin heavy chain 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os12g01390.1 LOC_Os12g01390 heavy chain of clathrin triskelion 0.03 OrthoFinder output from all 47 species
Lfl_g03514 No alias heavy chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species
MA_47260g0010 No alias Clathrin heavy chain 2 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
MA_8471497g0010 No alias Clathrin heavy chain 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp6g19660.1 No alias heavy chain of clathrin triskelion 0.03 OrthoFinder output from all 47 species
Nbi_g03873 No alias heavy chain of clathrin triskelion & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g13635 No alias heavy chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29284 No alias heavy chain of clathrin triskelion & original description: none 0.05 OrthoFinder output from all 47 species
Solyc03g096000.3.1 Solyc03g096000 heavy chain of clathrin triskelion 0.06 OrthoFinder output from all 47 species
Tin_g08699 No alias heavy chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e009296_P003 Zm00001e009296 heavy chain of clathrin triskelion 0.07 OrthoFinder output from all 47 species
Zm00001e020822_P001 Zm00001e020822 heavy chain of clathrin triskelion 0.05 OrthoFinder output from all 47 species
Zm00001e023940_P002 Zm00001e023940 heavy chain of clathrin triskelion 0.09 OrthoFinder output from all 47 species
Zm00001e039167_P001 Zm00001e039167 heavy chain of clathrin triskelion 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
InterPro domains Description Start Stop
IPR022365 Clathrin_H-chain_propeller_rpt 156 197
IPR015348 Clathrin_H-chain_linker_core 344 367
IPR000547 Clathrin_H-chain/VPS_repeat 557 692
IPR000547 Clathrin_H-chain/VPS_repeat 1437 1579
IPR000547 Clathrin_H-chain/VPS_repeat 993 1133
IPR000547 Clathrin_H-chain/VPS_repeat 1292 1431
IPR000547 Clathrin_H-chain/VPS_repeat 701 839
IPR000547 Clathrin_H-chain/VPS_repeat 1144 1281
IPR000547 Clathrin_H-chain/VPS_repeat 850 975
No external refs found!